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Bioconductor
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GenomicRanges
Representation and manipulation of genomic intervals
https://bioconductor.org/packages/GenomicRanges
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fixed makeGRangesFromDataFrame() for zero length DataFrame
#35
FelixErnst
closed
4 years ago
1
gpos/GPos equivalent for granges/GRanges
#34
MalteThodberg
closed
4 years ago
2
strange code for GenomicRanges:::compatibleStrand
#33
msannell
opened
4 years ago
1
expand makeGRangesFromDataFrame functionality
#32
LiNk-NY
opened
4 years ago
5
no convenient SimpleGRangesList to CompressedGRangesList as function
#31
LiNk-NY
closed
4 years ago
2
inner and outer mcols for GRangesFactor
#30
LTLA
opened
5 years ago
1
GPos - Error in getClass(x) : “UnstitchedGPos” is not a defined class
#29
peterblattmann
closed
5 years ago
1
Specialize findOverlaps for GRangesFactor objects
#28
LTLA
opened
5 years ago
3
Error in mapToTranscripts
#27
weir12
closed
5 years ago
2
GRangesFactor should inherit from GenomicRanges
#26
hpages
opened
5 years ago
0
Add GRangesFactor class
#25
hpages
closed
5 years ago
10
Inefficiency of GPos("chr1:1-4e8") with GenomicRanges 1.37.7
#24
hpages
closed
5 years ago
1
Feature request: make mcols on a GRangesList return a SplitDataFrameList
#23
FelixErnst
closed
4 years ago
3
Making it easier to convert from IGV coordinates
#22
Roleren
opened
5 years ago
0
Export GenomicRanges object as gtf file
#21
roosheelpatel
closed
4 years ago
1
coercion from character vector to GRanges does not report the faulty string
#20
hpages
opened
5 years ago
0
Bug in follow and precede
#19
LuukHenk
closed
5 years ago
1
annoying warning when `as.data.frame(..., stringsAsFactors=F)`-ing on GRanges object
#18
gwangjinkim
closed
5 years ago
7
gaps and GRangesList
#17
kasperdanielhansen
opened
5 years ago
3
findOverlaps with type="equal" and a GRangesList
#16
kasperdanielhansen
opened
5 years ago
6
propagating names from RangesList to GRanges
#15
lawremi
closed
5 years ago
4
Support distance() / nearest() for circular chromosomes
#14
vobencha
closed
5 years ago
2
Feature request: GPos() constructor can make a GPos object from an IPos object
#13
hpages
closed
5 years ago
1
Feature request: make intra- and inter- range transformations work on GPos objects
#12
hpages
opened
5 years ago
0
Speed difference in way you add mcols to GRanges
#11
Roleren
closed
5 years ago
4
vignettes/GenomicRangesIntroduction.Rmd
#10
lwaldron
closed
5 years ago
1
GRangesList fails with named arguments
#9
LTLA
closed
6 years ago
2
Unit tests succeed but for the wrong reason
#8
mtmorgan
closed
4 years ago
2
'update' methods need exporting?
#7
mtmorgan
closed
6 years ago
1
Easy access to inner metadata of a GRangesList
#6
LTLA
opened
6 years ago
7
Fix typos in intra-range-methods.Rd
#5
PeteHaitch
closed
6 years ago
1
IRanges promoters changes coming to GenomicRanges?
#4
PeteHaitch
closed
6 years ago
2
Equisplit
#3
alexandremkuhn
closed
6 years ago
9
Sorting a SortedByQueryHits produces a Hits
#2
LTLA
closed
6 years ago
1
Some fixes I would like
#1
Roleren
closed
6 years ago
1
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