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Bioconductor
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GoogleGenomics
[DEPRECATED] An R package for Google Genomics API queries.
Apache License 2.0
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Fix vignette per updates to underlying data.
#57
deflaux
closed
7 years ago
0
gRPC support and more authentication options
#56
siddharthab
closed
7 years ago
10
added code to getVariantCalls to cope with "no variants" in requested region
#55
vjcitn
closed
7 years ago
3
Variantcalls
#54
shwetagopaul92
closed
7 years ago
5
Variantcalls
#53
shwetagopaul92
closed
7 years ago
1
variantsToVRanges loses sample/call information
#52
vjcitn
closed
7 years ago
4
Switch to native Travis (container-based) support for R.
#51
siddharthab
closed
8 years ago
12
Update to v1.
#50
deflaux
closed
8 years ago
3
Add a method to reset the OAuth token.
#49
deflaux
opened
8 years ago
7
Update getVariants* calls to accept a variantSetId instead of datasetId
#48
mbookman
closed
7 years ago
1
Update Bioconductor variant converters to tolerate missing values.
#47
deflaux
opened
9 years ago
0
Update Bioconductor converters to handle multi-allelic data and data with non-variant segments.
#46
deflaux
opened
9 years ago
0
Version bump.
#45
deflaux
closed
9 years ago
0
Split the variant annotation vignette in two.
#44
deflaux
closed
9 years ago
0
Version bump.
#43
deflaux
closed
9 years ago
0
Ensure that any errors cause the Vignette build to fail.
#42
deflaux
closed
9 years ago
0
Add content about the API to the beginning of each vignette.
#41
deflaux
closed
9 years ago
16
Might want to update to the new location...
#40
pgrosu
closed
9 years ago
2
Native Travis support for R.
#39
siddharthab
closed
9 years ago
1
Port to native R support in Travis.
#38
siddharthab
closed
7 years ago
19
new function getAnyPage to make Google genomics API call.
#37
vmorozov
closed
9 years ago
9
Update links.
#36
deflaux
closed
9 years ago
3
Document steps for new package releases
#35
deflaux
opened
9 years ago
4
Remove skeleton for variantsToVCF
#34
siddharthab
closed
9 years ago
6
With feedback from jimhester's lintr.
#33
siddharthab
closed
9 years ago
4
Error [...] key 60 (char '<') not in lookup table
#32
danielemerico
closed
9 years ago
4
Bioc submission prep -- stage 2
#31
siddharthab
closed
9 years ago
24
Bioc submission prep -- stage 1
#30
siddharthab
closed
9 years ago
3
Problem authenticating with invokeBrowser=F
#29
jbelsky
closed
9 years ago
2
submit this package to BioConductor
#28
deflaux
closed
9 years ago
3
streamline authorization
#27
deflaux
closed
9 years ago
1
Fix to improve messaging and instructions around authentication.
#26
deflaux
closed
9 years ago
18
add retrying to all api methods
#25
cassiedoll
opened
10 years ago
0
Update code to v1beta2
#24
cassiedoll
closed
10 years ago
12
Upgrade shiny example to v1beta2
#23
cassiedoll
closed
10 years ago
2
Improve messaging and instructions around authentication.
#22
deflaux
closed
9 years ago
4
Example code motivating seqlevelsStyle() patch
#21
ttriche
opened
10 years ago
1
getting started confusion
#20
cassiedoll
closed
10 years ago
13
Restructured genomic coordinate conversion handling for variants.
#19
deflaux
closed
10 years ago
10
coding style
#18
deflaux
opened
10 years ago
19
improve performance
#17
deflaux
closed
7 years ago
8
Refactor of reads methods.
#16
deflaux
closed
10 years ago
5
use seqlevelsStyle() to normalize seqnames for readsets, variants, etc.
#15
ttriche
closed
10 years ago
2
seqlevelsStyle oddities
#14
ttriche
closed
10 years ago
10
genome reference assembly extraction from variants/reads objects?
#13
ttriche
opened
10 years ago
4
hosted shiny client seems to be dead
#12
ttriche
closed
9 years ago
11
An initial vignette for Variant Annotation.
#11
deflaux
closed
10 years ago
6
A few things I experienced
#10
pgrosu
closed
9 years ago
1
add a vignette for variant annotation with BioConductor
#9
deflaux
closed
10 years ago
3
API key auth and integration tests
#8
siddharthab
closed
10 years ago
9
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