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BiomedSciAI
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histocartography
A standardized Python API with necessary preprocessing, machine learning and explainability tools to facilitate graph-analytics in computational pathology.
GNU Affero General Public License v3.0
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how to change the device id?
#60
Extord1108
opened
3 months ago
0
Error
#59
sina1303
opened
6 months ago
2
Pypi Installer issue
#58
EncinasAlar
opened
6 months ago
0
Pretrained Weights for CellGraphModel not available
#57
DanishSyedM
opened
7 months ago
1
Depricated functions greycomatrix and greycoprops
#56
amirkasaei
opened
8 months ago
0
Updated skimage import graycomatrix, graycoprops for skimage >=0.19
#55
ChrisBtt
opened
9 months ago
0
Rename Seaborn style for matplotlib >=3.6
#54
ChrisBtt
opened
9 months ago
0
The pre-trained weights are not available now
#53
caodoanh2001
opened
1 year ago
9
PyPi's skimage import
#52
PeterrHH
opened
1 year ago
0
greycoprops/comatrix renamed to graycoprops/comatrix in skimage 0.19
#51
VolodymyrChapman
opened
1 year ago
0
Nuclei detection using StarDist?
#50
ajinkya-kulkarni
opened
1 year ago
0
AttributeError: 'Upsample' object has no attribute 'recompute_scale_factor'
#49
akhila1729
opened
1 year ago
1
Error: cannot import name 'greycomatrix' from 'skimage.feature' while importing histocartography
#48
akhila1729
closed
1 year ago
2
trying to make RAGGraphBuilder faster
#47
snibbor
opened
1 year ago
0
Question on the expected behavior for RAGGraphBuilder
#46
snibbor
opened
1 year ago
0
Aborted (core dumped)
#45
Parisa-Boodaghi
opened
1 year ago
0
minor style changes in readme
#44
kaczmarj
opened
1 year ago
0
CUDA Error
#43
SaharAlmahfouzNasser
closed
1 year ago
1
Fixes/pus
#42
PushpakPati
closed
1 year ago
0
How to show just sub-graph of a certain class by graph-pruning-explaining, just like the pictures shown in the paper
#41
xiaofochai
closed
1 year ago
1
How to Create a environment For GPU
#40
JiangWenJie-stack
opened
1 year ago
1
Graph creation doesn't behave properly when used in patho-quant-explainer
#39
CarlinLiao
closed
1 year ago
1
Environment dependency issue
#38
jiaqiwu1999
opened
1 year ago
5
The document not available
#37
pfunami
closed
1 year ago
2
GraphGradCAMExplainer use of backpropogation
#36
CarlinLiao
opened
1 year ago
1
Weights instead of model
#35
Ramxnan
closed
1 year ago
1
forward() missing 1 required positional argument: 'H'
#34
Ramxnan
closed
2 years ago
5
Torch version issue
#33
Ramxnan
closed
2 years ago
2
Add option to extract features from a specific CNN layer
#32
kevthan
closed
2 years ago
0
Nuclei instance types
#31
Abbas009
closed
1 year ago
1
AttributeError: 'Upsample' object has no attribute 'recompute_scale_factor'
#30
esratepe
closed
1 year ago
1
'Upsample' object has no attribute 'recompute_scale_factor'
#29
spencerkrichevsky
closed
2 years ago
1
HE Reference matrix
#28
krishnakanagal
closed
1 year ago
1
Normalized array is overwritten when after creating GaussianTissueMask with downsampling_factor = 1
#26
pablo-mas
opened
2 years ago
0
Process tensor with shape (batch,channels,w,h)
#25
WxpHB
opened
2 years ago
0
Vahadane StainNormalizer raises error
#24
NeelKanwal
closed
1 year ago
2
Update nuclei_extraction.py
#23
patricio-astudillo
closed
2 years ago
1
RuntimeError: unexpected EOF, expected 4530578 more bytes. The file might be corrupted.
#22
yangyang117
closed
2 years ago
4
Boundary condition bug?
#21
wang101
opened
2 years ago
0
multi-gpu usage
#20
innerones
closed
1 year ago
1
Use Imagenet mean & std normalization by default for MaskedGridDeepFeatureExtractor
#19
kevthan
closed
2 years ago
0
Nuclei labels
#18
elliewith
closed
2 years ago
1
Feature/masked features/gja
#17
guillaumejaume
closed
2 years ago
0
Add patch-based feature extractor that works with tissue masks
#16
kevthan
closed
2 years ago
0
Use correct dimensions for padding
#15
kevthan
closed
2 years ago
0
Optimize feature extraction based on instance map
#14
guillaumejaume
closed
3 years ago
0
Memory issues with Nuclei Extractor
#13
hossam-zaki
closed
1 year ago
1
Extract coordinates of nuclei in image
#12
hossam-zaki
closed
3 years ago
4
about BRACS dataset
#11
tikboaHIT
closed
3 years ago
1
Feature/model zoo/gja
#10
guillaumejaume
closed
3 years ago
1
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