issues
search
BlueBrain
/
Deep-Atlas
Apache License 2.0
5
stars
1
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Update full_pipeline.py
#78
dkeller9
opened
9 months ago
0
Dimension incompatibility of NRRD files with ITK-snap
#77
EmilieDel
opened
1 year ago
0
Dimension incompatibility of NRRD files with ITK-snap
#76
Sebastien-PILUSO
opened
1 year ago
1
Add group id option to Dockerfile.
#75
drodarie
closed
1 year ago
0
Handle ITK Error (#73)
#74
EmilieDel
closed
1 year ago
0
ITK ERROR: Total Mass of the image was zero. Aborting here to prevent division by zero later on.
#73
Sebastien-PILUSO
closed
1 year ago
0
Output .npy files have shape (N, M, K, 3), instead of (N, M, K)
#72
HDictus
closed
1 year ago
1
GeneInterpolate not accepting border_predictions
#71
HDictus
opened
1 year ago
0
Do not extrapolate when pair interpolation
#70
EmilieDel
closed
1 year ago
0
Nissl symmetry
#69
EmilieDel
closed
2 years ago
0
Considering a > 0 cutting angle
#68
cveraszto
opened
2 years ago
0
Stop interpolation at the last slice
#67
cveraszto
opened
2 years ago
1
Update README and Singularity image
#66
EmilieDel
opened
2 years ago
0
Add information for interpolator checkpoints
#65
EmilieDel
closed
2 years ago
0
Add format option on the full pipeline
#64
EmilieDel
closed
2 years ago
0
Put every parameters optional
#63
EmilieDel
closed
2 years ago
1
Make CCFv3 optional
#62
EmilieDel
closed
2 years ago
1
Add default value when --help
#61
EmilieDel
closed
2 years ago
0
Display defaults in --help
#60
jankrepl
closed
2 years ago
0
Monitor interpolation memory usage when using GPUs
#59
jankrepl
opened
2 years ago
0
Make sure Singularity does not load $HOME by default
#58
jankrepl
opened
2 years ago
0
Put every parameters as optional for readibility
#57
EmilieDel
opened
2 years ago
0
Print out defaults when `--help`
#56
jankrepl
closed
2 years ago
0
Put `CCFv3` path as optional path
#55
EmilieDel
closed
2 years ago
0
Feature/diogo issue 50
#54
drsantos89
closed
2 years ago
0
Improve Dockerfile
#53
EmilieDel
closed
2 years ago
0
Problem when trying to download gene
#52
EmilieDel
closed
2 years ago
2
Better docker setup
#51
EmilieDel
closed
2 years ago
1
Docker image on Singularity
#50
FrancescoCasalegno
closed
2 years ago
5
Better docker setup
#49
FrancescoCasalegno
closed
2 years ago
0
Turn resolution into a parameter (currently hardcoded)
#48
EmilieDel
opened
2 years ago
0
Create dockerfile
#47
EmilieDel
closed
2 years ago
2
Update code with changes of `atlannot`
#46
EmilieDel
closed
2 years ago
0
Update code with changes of `atlannot`
#45
EmilieDel
closed
2 years ago
0
Handle gene slices outside of Nissl shape
#44
EmilieDel
opened
2 years ago
0
Reintroduce remapping
#43
jankrepl
closed
2 years ago
0
Make sure registration always run between 2 volumes of identical dtype and value ranges
#42
jankrepl
closed
2 years ago
1
Fix formatting logging message
#41
jankrepl
opened
2 years ago
0
Add file handler for logging
#40
jankrepl
opened
2 years ago
0
Various optimizations
#39
jankrepl
closed
2 years ago
0
Add verbose argument to the CLI
#38
jankrepl
opened
2 years ago
0
Inspect input and output dtypes together with value ranges for all stages
#37
jankrepl
opened
2 years ago
0
Switch from `gene_id` to `experiment_id`
#36
EmilieDel
closed
2 years ago
0
Update section_numbers list when outside of nissl shape
#35
EmilieDel
closed
2 years ago
2
Handle slice number outside of the reference range
#34
jankrepl
closed
2 years ago
1
Improve README
#33
jankrepl
closed
2 years ago
0
Rename `gene_id` to something else
#32
jankrepl
closed
2 years ago
1
Add version specifiers for dependencies
#31
jankrepl
closed
2 years ago
1
Update README with the most important information
#30
jankrepl
closed
2 years ago
2
Drop remapping logic completely
#29
jankrepl
closed
2 years ago
0
Next