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BlueBrain
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Ultraliser
Reconstruction of watertight meshes, annotated volumes and center line skeletons of neuroscience spatial structures from non-watertight inputs, segmented masks, skeletons of NGV morphologies and volumes.
https://portal.bluebrain.epfl.ch
GNU General Public License v3.0
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Remove spines on the soma
#77
marwan-abdellah
closed
2 months ago
3
Compute distance from spine base to the soma
#76
marwan-abdellah
opened
2 months ago
1
Classification of arbors into axons and dendrites.
#75
marwan-abdellah
opened
2 months ago
0
Skeletonization statistics writer
#74
marwan-abdellah
closed
2 months ago
1
Identify and fix non-determinsitic behaviour in the Skeletonization code
#73
marwan-abdellah
closed
2 months ago
2
Remove the Filopodia branches from the soma
#72
marwan-abdellah
closed
2 months ago
1
Implement a binary PLY mesh reader and exporter.
#71
marwan-abdellah
opened
6 months ago
0
Connect morphology skeletons with multiple partitions.
#70
marwan-abdellah
closed
2 months ago
1
Split morphologies with multiple partitions into multiple objects
#69
marwan-abdellah
opened
11 months ago
1
KdTree implementation.
#68
Adrien4193
closed
1 year ago
0
Add a flag for conservative rasterization.
#67
marwan-abdellah
opened
1 year ago
0
Calculate the mesh surface based as a point cloud
#66
marwan-abdellah
closed
1 year ago
1
Inquiries about Vessel Graph format for ultraVessMorpho2Mesh
#65
Whan9811
opened
1 year ago
17
Clean the soma before exporting it
#64
marwan-abdellah
closed
2 months ago
1
Translatet the extracted morphology skeleton to the origin
#63
marwan-abdellah
opened
1 year ago
0
Removal of loops starting and ending at the same node
#62
marwan-abdellah
closed
1 year ago
0
Adjusth the radii of the samples based on the skeletonization resolution
#61
marwan-abdellah
opened
1 year ago
0
Implement an SWC exporter for skeletonized neurons
#60
marwan-abdellah
closed
2 months ago
2
Compute the average estimates of the morphological measurements
#59
marwan-abdellah
opened
1 year ago
0
Detecting and connecting multi-partitioned skeletons
#58
marwan-abdellah
closed
2 months ago
1
Spine detection from skeletons
#57
marwan-abdellah
closed
2 months ago
1
Detecting and handling loops between two skeleton points
#56
marwan-abdellah
closed
1 year ago
1
Implement a VMV5 format to load/export data file formats.
#55
marwan-abdellah
opened
1 year ago
0
Implement a WOBC functions for insertion and retrival from the volume
#54
marwan-abdellah
opened
1 year ago
0
Zero-voxel is set during the voxelization, probably the rasterization stage
#53
marwan-abdellah
closed
1 year ago
1
CMake Error at apps/CMakeLists.txt:84 (add_executable):
#52
nal10
closed
1 year ago
1
ultraVolume2Mesh
#51
marwan-abdellah
opened
1 year ago
0
Ultraliser::Mesh segfaults on destructor
#50
NadirRoGue
opened
1 year ago
0
Update README.md
#49
marwan-abdellah
closed
1 year ago
0
Update README.md
#48
ASVG
closed
1 year ago
0
Update README with new Comms contact details
#47
jplanasc
closed
1 year ago
0
Sparse voxel octree implementation
#46
marwan-abdellah
opened
1 year ago
0
Implement edge collapse-based mesh simplification.
#45
marwan-abdellah
closed
2 months ago
3
Export resampled morphologies in SWC and H5 formats
#44
marwan-abdellah
opened
2 years ago
0
Avoid using the soma reconstruction algorithm in ultraNeuroMorpho2Mesh
#43
marwan-abdellah
opened
2 years ago
0
Implement further resampling schemes for the morphologies
#42
marwan-abdellah
opened
2 years ago
0
Tune auto parameters to create smooth neuronal meshes from morphologies.
#41
marwan-abdellah
opened
2 years ago
0
Fix memory leaks for the vascular voxelization function.
#40
marwan-abdellah
closed
2 years ago
1
Updated Citation phrase
#39
alex4200
closed
2 years ago
0
Detect surface curvature and increase the tessellation around
#38
marwan-abdellah
opened
2 years ago
0
Fix cmake install & nrrdlib glm includes
#37
NadirRoGue
closed
2 years ago
0
Fix spack compilation
#36
NadirRoGue
closed
2 years ago
0
Update README.md
#35
alex4200
closed
2 years ago
0
Calculation of Betti Number
#34
marwan-abdellah
opened
2 years ago
0
Plotting script
#33
marwan-abdellah
opened
2 years ago
0
Strip OpenEXR remnants out of build system
#32
NadirRoGue
closed
2 years ago
0
Missing values for the command line arguments result in segmentation faults.
#31
marwan-abdellah
closed
2 years ago
1
Update CONTRIBUTING.md
#30
alex4200
closed
2 years ago
0
Update README.md
#29
alex4200
closed
2 years ago
0
Adding Travis CI plan.
#28
marwan-abdellah
opened
2 years ago
0
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