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BlueBrain
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morphoclass
Neuronal morphology preparation and classification using Machine Learning.
https://morphoclass.readthedocs.io
Apache License 2.0
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Add `train` stages in DVC for "checkpoints-lida" with "alternative neurites"
#41
FrancescoCasalegno
closed
2 years ago
0
Review and update the XAI CLI
#40
Stannislav
closed
2 years ago
0
Updating copyright year 2022
#39
bbpgithubaudit
closed
2 years ago
0
Clean / clear all `__init__.py`
#38
Stannislav
opened
2 years ago
0
Improve test coverage
#37
Stannislav
opened
2 years ago
1
Enable bandit
#36
Stannislav
opened
2 years ago
0
Add the "cancel previous runs" CI step
#35
Stannislav
closed
2 years ago
0
Outdated CI runs should be cancelled
#34
Stannislav
closed
2 years ago
0
Fix mypy errors
#33
Stannislav
closed
2 years ago
0
Add a CI badge to README
#32
Stannislav
closed
2 years ago
0
Add a CI badge
#31
Stannislav
closed
2 years ago
0
Checkpoints Save/Load from Different Devices
#30
FrancescoCasalegno
opened
2 years ago
0
Morphometrics: feature extraction + classification model training
#29
FrancescoCasalegno
closed
2 years ago
0
Review XAI functionalities for each model
#28
FrancescoCasalegno
closed
2 years ago
0
Add column `balanced_accuracy` to the results table of `morphoclass performance-table`
#27
FrancescoCasalegno
closed
2 years ago
0
Write HTML table with confusion matrix in the HTML reports
#26
FrancescoCasalegno
opened
2 years ago
0
Inter-Rater for Janelia L5 cells
#25
FrancescoCasalegno
closed
2 years ago
0
Publish Docs on RTD
#24
FrancescoCasalegno
closed
2 years ago
0
Consider using per-class weights during training
#23
FrancescoCasalegno
opened
2 years ago
0
`WARNING: The least populated class in y has only 2 members, which is less than n_splits=3`
#22
FrancescoCasalegno
opened
2 years ago
0
Remove obsolete entrypoint commands
#21
FrancescoCasalegno
closed
2 years ago
0
Update docs
#20
Stannislav
closed
2 years ago
0
Clarify instructions on how to build Docs
#19
FrancescoCasalegno
closed
2 years ago
0
Add description `desc` for each DVC stage in the `dvc.yaml` file
#18
FrancescoCasalegno
closed
2 years ago
0
Add repo banner to `README.md`
#17
FrancescoCasalegno
closed
2 years ago
0
Remove `setuptools` and `wheels` from `install.sh`?
#16
FrancescoCasalegno
closed
2 years ago
0
Update DVC training stages - use pre-extraced features
#15
Stannislav
closed
2 years ago
3
Add morphometrics features to DVC tracking
#14
FrancescoCasalegno
closed
2 years ago
0
Add tests suite
#13
FrancescoCasalegno
closed
2 years ago
1
Make package ready and upload on PyPI
#12
FrancescoCasalegno
opened
2 years ago
2
Upgrade to PyTorch Geometric 2.x
#11
FrancescoCasalegno
opened
2 years ago
0
Add GitHub template for Pull Requests
#10
FrancescoCasalegno
closed
2 years ago
0
Add Janelia stats plotting stage in DVC
#9
FrancescoCasalegno
closed
2 years ago
0
DVC stage `plot-dataset-stats` does not cover Janelia dataset
#8
FrancescoCasalegno
closed
2 years ago
0
Add the DVC config file
#7
Stannislav
closed
2 years ago
0
Open Sourcing Checklist fixes
#6
FrancescoCasalegno
closed
2 years ago
0
Publish documentation on ReadTheDocs
#5
FrancescoCasalegno
closed
2 years ago
0
Enable `sanitize` stage for MCAR curation workflow
#4
FrancescoCasalegno
closed
2 years ago
3
Refactor the `train` and `eval` stages in DVC
#3
FrancescoCasalegno
closed
2 years ago
0
Add GitHub Actions for CI/CD
#2
FrancescoCasalegno
closed
2 years ago
1
Add test suite
#1
FrancescoCasalegno
closed
2 years ago
0
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