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BoevaLab
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FREEC
Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data
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Alternative FREEC usage from a container
#104
kirilllzaitsev
opened
2 years ago
0
Abnormally low reads used to compute CN profile
#103
WillieYu
closed
2 years ago
1
Compilation error on Ubuntu
#102
SzilviaKiriakov
opened
2 years ago
6
Segmentation fault (core dumped)
#101
wyqhyrz
opened
2 years ago
1
Help with ratio.txt file
#100
merckey
closed
2 years ago
2
Troubles in inferring LOH
#99
Giuseppe1995
opened
2 years ago
4
Can freec be used for trio analysis？
#98
bucongfan
opened
3 years ago
1
Segfault when reading mappability
#97
ericblanc20
opened
3 years ago
0
Control-FREEC v11.6 failed
#96
lmanchon
opened
3 years ago
3
missing small deletions
#95
aheravi
opened
3 years ago
6
Failed to run segmentation and segmentatuon fault (core dumped)
#94
ahgillmo
closed
3 years ago
2
Failed to open file "1" : No such file or directory
#93
AlsoATraveler
closed
1 year ago
3
Stack smashing detected - Error
#92
MikeWLloyd
closed
3 years ago
2
unable to read bam files
#91
Lyn16
opened
3 years ago
7
can't get BAF from freec
#90
lizhan96
opened
3 years ago
1
mateOrientation or matesOrientation?
#89
rsharris
opened
3 years ago
2
Apparently only one BAM file allowed as input; but Config file parser doesn't warn user if they add more.
#88
rsharris
opened
3 years ago
7
Error: zero reads in windows with the GC-content around X with interval Y
#87
alxsimon
opened
3 years ago
10
_CNVs file
#86
sotaro-kanematsu
opened
3 years ago
9
Error in GenomeCopyNumber::addBAFinfo
#85
sotaro-kanematsu
opened
3 years ago
2
Subclonal frequency
#84
kmavrommatis
opened
3 years ago
9
CNV
#83
kevin-furant
closed
3 years ago
0
why output *.gz_CNVs just has 7 columns?
#82
kevin-furant
opened
3 years ago
3
Call CNV on RAD data
#81
X-Mialhe
opened
3 years ago
1
Interpreting an increase in CN for the majority of the genome
#80
haraldgrove
opened
3 years ago
7
Segmentation fault
#79
jfnavarro
opened
4 years ago
6
Interpretation of homozygous deletions
#78
aadamk
opened
4 years ago
1
duplicate line in CNVs file
#77
c11cc
opened
4 years ago
1
Genotype info missing for X and Y chromosomes
#76
popicka
opened
4 years ago
1
Annotation of segments
#75
kumara3
opened
4 years ago
1
Add conda and usegalaxy badge
#74
npinter
opened
4 years ago
0
Error in linear regression, code: -1
#73
abedkurdi
opened
4 years ago
1
Combined plot for All chromosomes
#72
sagarutturkar
opened
4 years ago
2
Fix when fasta has more than one word in header
#71
monsanto-pinheiro
opened
5 years ago
0
ERROR: need a bed file with exon coordinates
#70
yueyangtime
opened
5 years ago
3
Is there a minimum number for the number of amplicons?
#69
yuyuliu
closed
5 years ago
2
restult file has no header
#68
yueyangtime
closed
5 years ago
1
All zero windows with reads with segfault
#67
mevers
opened
5 years ago
8
CRAM support added w/samtools. Multithreaded computation is added for…
#66
calkan
closed
5 years ago
0
bedgraph coordinates bigger than chromosome length
#65
gbdias
opened
5 years ago
0
Using long reads in Control-FREEC
#64
gbdias
closed
5 years ago
4
setting control genome ploidy
#63
Aborneman
opened
5 years ago
1
Set contaminationAdjustment = TRUE but freec still reports "FREEC is not going to adjust profiles for a possible contamination by normal cells"
#62
riyuebao
opened
5 years ago
3
ratio in *ratio.txt changed in new version 11.5?
#61
zhangb1
opened
5 years ago
7
seg files from Freec outputs
#60
kgaonkar6
closed
1 year ago
7
Makefile.freec
#59
xusailor
closed
5 years ago
0
Makefile.freec
#58
darmac
closed
5 years ago
0
hg38 Annotation files
#57
maryawood
closed
5 years ago
2
explanation of ratio in *_ratio.txt
#56
Tina9
closed
5 years ago
2
Error of makeGraph.R
#55
Tina9
closed
5 years ago
6
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