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BoevaLab
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FREEC
Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data
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the website of control freec can't open
#54
songxiaoning
closed
5 years ago
1
is freec fit for HLA LOH detect?
#53
kobejamescurry
opened
5 years ago
0
terminate called after throwing an instance of 'std::out_of_range' what(): basic_string::substr
#52
hongssy
opened
5 years ago
8
Install error
#51
ChaoLei1120
opened
5 years ago
0
Improve slightly procedure for best ploidy detection
#50
gladkia
opened
5 years ago
0
Empty output file ".bam_CNVS"
#49
ZKai0801
opened
5 years ago
1
update config demo
#48
dongweigogo
opened
6 years ago
0
bam file used in control-FREEC
#47
keryruo
closed
6 years ago
1
Your GC-content file is empty or is in a wrong format Please use chomosome sequences (option "chrFiles") to recreate it!
#46
marcotolone
opened
6 years ago
2
basic_string::substr: __pos (which is 139) > this->size() (which is 136)
#45
igordot
opened
6 years ago
2
polynomial error
#44
deepalivasoya
opened
6 years ago
1
Error on duplicated target regions
#43
jenzopr
closed
6 years ago
7
Covert results to vcf file
#42
huangl07
opened
6 years ago
1
FREEC cannot open .vcf.gz file
#41
bibbers93
opened
6 years ago
7
Status Column not present in _CNVs file
#40
paurods
opened
6 years ago
3
FREEC was not able to extract reads
#39
huangl07
closed
6 years ago
5
Exome-seq Copy number analysis
#38
kgaonkar6
closed
6 years ago
1
captureRegions in configure
#37
lkalbert001
opened
6 years ago
1
error: calculatedMedianAround
#36
Cathy1992
opened
6 years ago
1
Covert results to vcf file
#35
KeyTals
opened
6 years ago
0
Warning: control length is not equal to the sample length for chromosome M
#34
moshl
closed
6 years ago
5
The exact meaning of the "telocentromeric=" option in the configuration file
#33
yjx1217
opened
6 years ago
0
What dose "-" mean in `genotype` column of CNV output from FREEC？
#32
likelet
closed
6 years ago
1
empty pileup file produced
#31
likelet
closed
6 years ago
7
readCountThreshold calculation
#30
igordot
opened
7 years ago
8
_CNVs file versus _ratio.txt file versus capture regions BED file
#29
igordot
opened
7 years ago
5
"*ratio.txt"file question ?
#28
fengdong110
closed
7 years ago
5
Segmentation fault (core dumped)
#27
michelatebaldi
closed
7 years ago
2
Licensing condition
#26
wongs2
closed
7 years ago
1
if tumor sample is not purity, how to solve it?
#25
moshl
closed
7 years ago
7
fixed script shebangs for multi env use
#24
matthdsm
closed
7 years ago
1
support for CRAM files through samtools
#23
matthdsm
closed
7 years ago
1
amplicon data
#22
yiliu4234
closed
7 years ago
6
Config file
#21
Subhi
closed
7 years ago
10
Segmentation fault (core dumped) at "will remove all windows with read count in the control less than 50"
#20
igordot
opened
7 years ago
5
Warning: minimal recommended polynomial degree for "ReadCount ~ GC-content" is 3
#19
igordot
closed
7 years ago
3
expalinations for makeGraph.R output
#18
hongenxu
closed
7 years ago
2
compilation error in Mac OSX
#17
krsachin
closed
7 years ago
4
Cannot generate BAF files
#16
ericpeny
closed
7 years ago
7
Difference between pre-made pileup and mini-pileups
#15
sambrightman
opened
7 years ago
4
Improve warnings for BAF requirements
#14
sambrightman
opened
7 years ago
0
window=0 warning
#13
sambrightman
closed
7 years ago
2
Further code cleanup
#12
sambrightman
opened
7 years ago
2
Build warnings, potential bugs
#11
sambrightman
closed
7 years ago
3
Use standard process and exponential functions on OS X
#10
sambrightman
opened
7 years ago
0
.gitignore build artefacts
#9
sambrightman
opened
7 years ago
0
bad alloc when running with GC correction
#8
TracyBallinger
closed
7 years ago
1
compile error in 9.7
#7
RichardCorbett
closed
8 years ago
2
cannot "make" free from version 9.7 source file
#6
hongenxu
closed
8 years ago
3
run error
#5
fengdong110
closed
7 years ago
7
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