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CAMI-challenge
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OPAL
OPAL: Open-community Profiling Assessment tooL
https://cami-challenge.github.io/OPAL/
Apache License 2.0
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Use OPAL for metabarcoding assessment
#58
paulzierep
opened
2 months ago
2
Bray-Curtis distance calculation
#57
rpelicaen
closed
3 months ago
1
Bump jinja2 from 3.1.2 to 3.1.3
#56
dependabot[bot]
opened
5 months ago
0
How does OPAL compute unifrac?
#55
c4-driod
closed
1 year ago
1
Labels in Spider plots are incorrect color
#54
Tiam-F
closed
1 year ago
1
How to convert into CAMI Bioboxes format?
#53
eparisis
closed
1 year ago
2
The required Python version 3.7 is not compatible with suggested pandas version
#52
dawnmy
closed
1 year ago
1
Bump numpy from 1.21.4 to 1.22.0 in /requirements
#51
dependabot[bot]
opened
2 years ago
0
Option -r RANKS seems to not do much (GOLDSTD requires strain)
#50
4less
closed
1 year ago
1
TypeError: format() got an unexpected keyword argument 'precision'
#49
zhang570221322
closed
2 years ago
1
AttributeError: unexpected attribute 'callback' to Slider, similar attributes are js_event_callbacks
#48
zhang570221322
closed
2 years ago
0
AttributeError: unexpected attribute 'callback' to Slider, similar attributes are js_event_callbacks
#47
zhang570221322
closed
2 years ago
4
Proportions on stacked barplot not summing up to 100
#46
ScaonE
closed
2 years ago
1
Example command
#45
ScaonE
closed
2 years ago
1
Fail to generate fingures and HTML with self-made gold-standard profile without "strain" data
#44
shenwei356
closed
2 years ago
17
conda dependencies
#43
shenwei356
closed
3 years ago
2
Add option to filter out certain taxa
#42
fernandomeyer
opened
3 years ago
0
Future warning
#41
dkoslicki
closed
2 years ago
0
Add mean L1 norm to absolute plots
#40
dkoslicki
closed
1 year ago
0
Filtering done before calling `compute_metrics` so that all metrics get filtered profiles
#39
dkoslicki
closed
2 years ago
2
Bump version and release
#38
dkoslicki
closed
2 years ago
0
Add tree visualizations
#37
dkoslicki
closed
2 years ago
1
Recover ability to set all internal branch lengths equal to 1, accounting for missing internal nodes
#36
dkoslicki
opened
4 years ago
0
Check if branch lengths in EMDUnifrac are populating correctly
#35
dkoslicki
closed
3 years ago
1
Add ability to not normalize when computing EMDUnifrac
#34
dkoslicki
closed
2 years ago
3
Expose branch length function on CLI for EMDUnifrac
#33
dkoslicki
closed
3 years ago
3
Interactive ranking plots labeled incorrectly
#32
dkoslicki
closed
3 years ago
1
Modify EMDUnifrac so the results are more informative
#31
dkoslicki
closed
2 years ago
6
Strains in the gold standard?
#30
luizirber
closed
4 years ago
3
Python version wrong?
#29
davidbio
closed
2 years ago
0
Rankings on superkingdom and spcies level
#28
nlapier2
closed
5 years ago
1
Scoring Ties
#27
nlapier2
closed
5 years ago
3
Fix html collision
#26
sjanssen2
closed
6 years ago
1
ImportError: No module named 'html.parser'; 'html' is not a package
#25
sjanssen2
closed
6 years ago
2
Error when running tsv2biom.py
#24
muslih14
closed
6 years ago
6
Discrepancies in L1 norm between opal and CAMI
#23
dkoslicki
closed
6 years ago
7
a starter for a non interactive bar plot via seaborn
#22
sjanssen2
closed
2 years ago
1
config file
#21
sjanssen2
closed
6 years ago
1
New multi-sample toy data set
#20
abremges
closed
6 years ago
7
Private -> Public
#19
sjanssen2
closed
6 years ago
2
Add biome fomat as input formats
#18
alicemchardy
closed
6 years ago
4
assessment on CAMI data
#17
alicemchardy
closed
6 years ago
6
add f1-score metric
#16
alicemchardy
closed
6 years ago
1
define metrics in readme
#15
alicemchardy
opened
6 years ago
0
Highscore Figure 3c
#14
sjanssen2
closed
6 years ago
0
ranking table
#13
sjanssen2
closed
6 years ago
5
Using pandas for organizing metrics results and reporting into files
#12
sjanssen2
closed
6 years ago
1
add required minimal number of profiles to readme
#11
sjanssen2
closed
6 years ago
1
alpha/beta diversity measures
#10
abremges
closed
6 years ago
15
Do not use tk
#9
pbelmann
closed
6 years ago
0
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