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COMBINE-lab
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salmon
🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment
https://combine-lab.github.io/salmon
GNU General Public License v3.0
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Error in library(edgeR) - there is no package called 'edgeR'
#855
ulin27
closed
1 year ago
2
salmon quantify
#854
SSaleem94
closed
1 year ago
2
[error] Can't find left Boundary.
#853
lancy-liang
opened
1 year ago
0
Problem to interpret the output statistics of Salmon 1.10.1
#852
FlorianRocher
closed
1 year ago
0
Version Server Response: Not Found when attempting a mapping based quantification
#851
KAffoh
closed
1 year ago
3
Identifying sampletags in R2 sequence from Rhapsody
#850
Starahoush
closed
1 year ago
2
Issue with the quant merge
#849
hasanalanya
opened
1 year ago
0
LIBTYPE question
#848
EsperanzaDai
opened
1 year ago
0
Can't run Salmon 1.8.0 for reads single-end
#847
shuzoarthur
opened
1 year ago
1
Unit tests with `make test` not finding `libtbb.so.12`
#845
rorynolan
opened
1 year ago
2
Read tracking in Salmon (alignment mode)
#844
apredeus
closed
1 year ago
2
replaced non-ACGT nucleotides
#843
GimenaA
opened
1 year ago
1
Error in DGEList(counts = cnt, group = group) : non-numeric values found in counts
#842
Arturo3116
opened
1 year ago
0
GitHub: Binary for 0.10.1 missing
#841
HenrikBengtsson
opened
1 year ago
3
same read files, but different most likely library type detected with different transcriptome
#840
hwilliam05
opened
1 year ago
4
IDT Targeted Panels
#839
pintoa1-mskcc
opened
1 year ago
0
Low mapping rate on metagenomic data(salmon 0.14.1)
#838
liangyong1991
closed
1 year ago
1
salmon index was invoked improperly - bad_alloc
#837
ucabuk
opened
1 year ago
0
Develop
#836
rob-p
closed
1 year ago
0
Segmentation fault with shipped example
#835
tillea
closed
1 year ago
20
Missing documentation for Salmon metagenomics mode (--meta)
#834
JSSaini
closed
1 year ago
4
Error in geneIndexList[[i]] : subscript out of bounds
#833
wiafridi
opened
1 year ago
2
Exception : [Error: RapMap-based indexing is not supported in this version of salmon.]
#832
Arturo3116
closed
1 year ago
3
Merge develop -> master
#831
rob-p
closed
1 year ago
0
salmon taking unexpectedly long to map reads
#830
charlesfoster
opened
1 year ago
4
Salmon indexing hangs or throws segmentation fault
#829
zaherlab
closed
1 year ago
3
Question about whether it can be used for TEs quantification
#828
Zhangcy018
opened
1 year ago
0
No concordant consistent mappings using Alevin for Visium Spatial data
#827
nklimp
opened
1 year ago
0
Salmon for miRNA quantification? - This is not a bug but a request for advise please
#826
peterthorpe5
opened
1 year ago
4
Segmentation fault in bulk mode with .bam files
#825
archnakj
opened
1 year ago
0
Salmon(on galaxy) output only few transcript
#824
KS751515
opened
1 year ago
1
Salmon in metagenomics mode (--meta) yield gene per million reads or per sample?
#823
JSSaini
opened
1 year ago
1
how to quantify reads in alignment-based mode in salmon?
#822
MonaLiu421
closed
1 year ago
6
How does Salmon handle running out of memory?
#821
ryanpe13002
opened
1 year ago
0
Black and white listing of sequences
#820
harish0201
opened
1 year ago
0
Lower mapping percentages
#819
ryanpe13002
opened
1 year ago
4
Bootstrapping output files
#818
ryanpe13002
closed
1 year ago
1
counter artificial increase in barcode length
#817
Gaura
closed
1 year ago
1
doc on read geometry
#816
rob-p
opened
1 year ago
2
Add CodeQL workflow for GitHub code scanning
#815
lgtm-com[bot]
closed
8 months ago
0
Low Mapping Rate
#814
umutcakir
opened
1 year ago
1
Can't find left Boundary
#813
cliftonlewis
closed
1 year ago
10
log(CPM) and TPM are so different
#812
biozzq
opened
2 years ago
5
Documentation lacking long reads (ont) information
#811
Lucas-Servi
opened
2 years ago
1
cmake/TestSalmonQuasi.cmake: more verbose test failure messages.
#810
emollier
closed
2 years ago
1
Updated reference genome causes different transcripts quantification
#809
airbox11
opened
2 years ago
0
UMI deduplication inconsistencies compared to SevenBridges analysis
#808
gringer
opened
2 years ago
0
k-mers for TCGA studies
#807
ryanpe13002
closed
2 years ago
2
Integer overflow in metadata info file
#806
gringer
opened
2 years ago
2
Adding new scRNA-seq technology to salmon alevin
#805
biobenkj
opened
2 years ago
5
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