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COMBINE-lab
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salmon
🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment
https://combine-lab.github.io/salmon
GNU General Public License v3.0
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Issues about using salmon quant on multiple bam files
#920
ShaowenJ
opened
8 months ago
4
index error
#919
JXAUDZF
opened
8 months ago
3
Difference between the genome browser view of BAM produced by STAR and the result of Salmon
#918
NJU-Bio-Info
opened
8 months ago
1
Develop
#917
rob-p
closed
8 months ago
0
update stadenio and htscodecs
#916
pabloaledo
closed
8 months ago
0
Salmon installation problem
#915
bioinfolabmu
opened
8 months ago
3
Error running salmon
#914
bali-eng
opened
9 months ago
0
rapidjson internal assertion failure: IsObject()
#913
AndreaGhiroldi
opened
9 months ago
0
Configure error installing salmon
#912
jmbono
opened
9 months ago
1
Precompiled asset missing for version 1.10.1
#911
paulmenzel
opened
10 months ago
0
salmon quantmerge skipped the nucleotide IDs that have multiple sequences - Metagenome dataset
#910
jiazhou0116
opened
10 months ago
2
icu version conflict with libboost
#909
JustinYeon
opened
10 months ago
0
After using SAMtools to convert bam to fastq, the salmon quantification mapping rate is super low: is it normal?
#908
KOBE24DUNK
opened
10 months ago
0
(sorry for repeated reference from discussion)
#907
KOBE24DUNK
closed
10 months ago
0
Only 50% reads aligned on PE human mRNA stranded library
#905
cecile2429
opened
10 months ago
0
Please make gencode SA files available
#904
Rfriedmancolumbia
opened
11 months ago
0
Quantification in Alignment mode for Nanopore Data
#903
Harshangda
opened
11 months ago
2
segmentation fault when skipQuant flag is set
#902
aydemiro
opened
12 months ago
0
Mapping one organism from a mixed tissue sample
#901
igwill
closed
12 months ago
2
View salmon quant output in a browser
#900
steven-bioinfo
opened
1 year ago
1
Salmon quant error in --ont mode (Bus error (core dumped)
#898
rugilemat
opened
1 year ago
0
anaconda version of salmon outdated, missing decoys option
#895
adamfreedman
closed
1 year ago
7
Hi @Ray6283,
#890
Ray6283
opened
1 year ago
1
(alevin) Specifying --read-geometry in paired-end samples
#886
yyoshiaki
opened
1 year ago
0
Segmentation fault in salmon quant
#881
astrdhr
opened
1 year ago
4
-seqbias | is it specific to random hexameric primers ?
#880
SHITIJ9810
closed
1 year ago
4
How to handle Multiplet data?
#879
mugpeng
opened
1 year ago
0
missing flags for indropV2
#878
mugpeng
closed
1 year ago
4
Inconsistency in salmon quant Documentation Regarding --eqclasses Option
#877
Vida0
opened
1 year ago
2
Seg Fault in salmon quant
#876
alexdhill
closed
1 year ago
2
mapping features from chromium v2 10X library
#875
andy3nieto
opened
1 year ago
0
alevin handling of sublibrary BC in Parse data
#874
davidaknowles
closed
1 year ago
4
--biasCorrect not recognised
#873
hector3500
closed
1 year ago
1
32-bit support?
#872
robertaboukhalil
opened
1 year ago
0
Installation of Salmon on M1 Mac
#871
NordinZandhuis
closed
1 year ago
1
salmon quant was invoked improperly. For usage information, try salmon quant --help Exiting.
#870
Alecrim24
opened
1 year ago
2
If this is a paired-end library, are you sure the reads are properly paired?
#869
calebmallery
opened
1 year ago
0
ONT markov model
#868
JuliaHolz
closed
1 year ago
1
Alevin failing to quantitate Split-seq reads
#867
jmerkin
opened
1 year ago
0
fix cmake to find hts
#866
pabloaledo
opened
1 year ago
3
Errors in Salmon Indexing with --features Option
#865
uveksamoosmeh
opened
1 year ago
1
CXXABI_1.3.11 and GLIBCXX_3.4.22 not found
#864
najibveto
closed
1 year ago
1
Salmon quant reports transcripts in BAM not found in FASTA, despite GFFREAD correction
#863
majdabdul
opened
1 year ago
2
Salmon: rapidjson internal assertion failure: IsObject()
#862
Dylan-Nico
closed
1 year ago
1
Possible to add support for 10x VDJ?
#861
jeremymsimon
opened
1 year ago
2
Compilation fails with "lto1: internal compiler error: Segmentation fault"
#860
IgnasiLucas
closed
1 year ago
1
Calculate differential splicing
#859
SSaleem94
closed
1 year ago
1
Hi, I am having issues with calculating the differential splicing and I kept getting this error message, even though all files required are uploaded. Could you please help me with this issue. The error message is below :
#858
SSaleem94
closed
1 year ago
0
Develop
#857
rob-p
closed
1 year ago
0
Adding <cstdint> includes to allow building with gcc13
#856
A-N-Other
closed
1 year ago
2
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