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CRI-iAtlas
/
shiny-iatlas
An interactive web portal for exploring immuno-oncology data. This repo now superseded by iatlas-app
https://www.cri-iatlas.org
Apache License 2.0
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Investigate and incorporate use of alpha parameter for cell nuclei
#161
vthorsson
closed
4 years ago
1
Include friendly-name option for receptors and ligands in cytokine network
#158
vthorsson
closed
4 years ago
4
Feature/postgres db
#157
jonryser
closed
4 years ago
0
Implementing renv and updating README to help get someone started.
#156
jonryser
closed
4 years ago
1
Discrepancy in cytokine network expression data sources
#155
vthorsson
closed
4 years ago
11
Pin down dependencies (and versions), make package installable
#154
jaeddy
closed
4 years ago
1
New subtype classifier
#153
Gibbsdavidl
closed
5 years ago
0
Immune trends correlation issue
#152
andrewelamb
closed
4 years ago
5
TIL image viewer down.
#151
Gibbsdavidl
closed
5 years ago
3
Log scale display or log-transformed data needed for some variables display in violin plots
#150
vthorsson
closed
5 years ago
1
More clarity / options on correlation metrics
#149
vthorsson
closed
5 years ago
2
Create submodules
#146
andrewelamb
closed
4 years ago
0
Clinical Outcomes concordance index not showing a heatmap
#145
andrewelamb
closed
5 years ago
1
Immunomodulator data file - multiple values
#143
vthorsson
closed
4 years ago
16
PAAD missing from list
#142
Gibbsdavidl
closed
4 years ago
4
Adding IO Landscape URLs for IO targets
#141
vthorsson
closed
5 years ago
0
Concordance Index in clinical outcomes not working
#140
vthorsson
closed
5 years ago
2
README refers to a deprecated method for deployment
#139
vthorsson
closed
4 years ago
3
Possible failure of Clinical Outcome module on Custom Sample Group
#138
vthorsson
closed
4 years ago
5
IO target dev
#137
vthorsson
closed
5 years ago
0
Subtype update
#136
Gibbsdavidl
closed
5 years ago
0
Custering model missing for Immune Subtype Predictor
#135
Jasonliu21
closed
5 years ago
2
Display the longer full TCGA tumor name in dropdown menu
#134
vthorsson
closed
5 years ago
2
Color scale needs centering in heatmap for Immune Feature Trends
#133
vthorsson
closed
5 years ago
0
Fix Clinical Outcomes when ploting TCGA subtypes
#132
andrewelamb
closed
5 years ago
6
Carry TCGA subtype colors into app when available
#131
vthorsson
closed
5 years ago
2
Edit PanGI subtypes for consistency with final PanGI manuscript
#130
vthorsson
closed
5 years ago
2
Upload your own gene sets and score those
#129
vthorsson
closed
3 years ago
0
Include normal tissue for comparison
#128
vthorsson
closed
3 years ago
0
Provide Information on TCGA Subtypes
#125
vthorsson
closed
5 years ago
2
Receive notifications of major versions
#124
vthorsson
closed
4 years ago
2
Edits to TIL map description text
#122
vthorsson
closed
5 years ago
2
Prioritize suggestions from conference
#121
andrewelamb
closed
5 years ago
1
Data integration
#120
andrewelamb
closed
5 years ago
1
Add heatmap correlation choice.
#119
andrewelamb
closed
5 years ago
0
Issue with use submitted groups and drivers module
#118
andrewelamb
closed
5 years ago
0
Merge develop for release
#117
jaeddy
closed
6 years ago
0
Immune subtype predict
#116
jaeddy
closed
6 years ago
0
Improve static text descriptions
#115
vthorsson
closed
6 years ago
0
Remove Feature Matrix Label column from Data Description
#114
vthorsson
closed
6 years ago
0
Add filter to Data Description table
#113
vthorsson
closed
6 years ago
1
Merge cluster-immune-types into develop
#112
andrewelamb
closed
6 years ago
0
Merge driver-mutations into develop
#111
andrewelamb
closed
6 years ago
0
Merge TILmap into develop
#110
andrewelamb
closed
6 years ago
0
TILmap improvements
#109
andrewelamb
closed
6 years ago
0
Add interactivity to TILmap violin plots
#108
vthorsson
closed
6 years ago
0
Display p-value and effect size in driver violin plot
#107
vthorsson
closed
6 years ago
0
Indicate significance threshold in driver volcano plot
#106
vthorsson
closed
6 years ago
0
Add Search to Immunomodulator table
#105
vthorsson
closed
6 years ago
0
Tests refactor
#104
andrewelamb
closed
6 years ago
0
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