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CartwrightLab
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dawg
Simulating Sequence Evolution
GNU General Public License v2.0
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Migrate from boost program options to CLI11
#75
jgarciamesa
closed
1 year ago
0
Migrate from trick file format to YAML
#74
jgarciamesa
opened
1 year ago
5
Migration from CMake to Meson
#73
jgarciamesa
closed
2 years ago
0
Change internal API to be more developer friendly.
#72
reedacartwright
opened
2 years ago
0
Explore alternative strategies for simulation. Figure out in what parameter ranges which algorithms are most efficient.
#71
reedacartwright
opened
2 years ago
0
Update the random number library to the latest algorithms used in the Cartwright Lab.
#70
reedacartwright
opened
2 years ago
0
Optimize alignment construction algorithm.
#69
reedacartwright
opened
2 years ago
0
Replace CMake build system with Meson
#68
reedacartwright
opened
2 years ago
0
Validate models
#67
reedacartwright
opened
2 years ago
0
Reduce memory consumption with large trees
#66
reedacartwright
opened
2 years ago
0
Finalizing Dawg 2.0
#65
reedacartwright
opened
2 years ago
1
Increment maximum number of node IDs
#64
jgarciamesa
closed
2 years ago
0
Dawg outputs sequences containing only gaps when simulating large MSAs with Indels
#63
trongnhanuit
closed
2 years ago
2
Precompiled binaries are missing (download links not working)
#62
LysSanzMoreta
opened
3 years ago
0
Sequence with no Adenine(A) using 'GTR' model to simulate
#61
yukimayuli-gmz
closed
2 years ago
6
GUI proposal for dawg
#60
zmertens
closed
5 years ago
0
Use boost::optional instead of boost::tribool
#59
jgarciamesa
closed
5 years ago
2
Add Codon Map to get codon values at residue construction
#58
zmertens
closed
5 years ago
2
Adding YAML Support for input files
#57
zmertens
closed
5 years ago
1
Test script fails
#56
tillea
opened
6 years ago
4
Change error system to use std::error_code
#55
jgarciamesa
closed
4 years ago
0
Different power of two algorithm
#54
zmertens
closed
6 years ago
2
new release?
#53
dlaehnemann
closed
6 years ago
6
Dawgjs
#52
zmertens
closed
6 years ago
2
Python module for DAWG - PyDawg
#51
zmertens
closed
6 years ago
4
Add travis ci file
#50
zmertens
closed
6 years ago
4
Add an editorconfig
#49
zmertens
closed
6 years ago
2
Replace boost int types with CPP std types
#48
zmertens
closed
6 years ago
5
Position of Output.Rna in a dawg trick file should not matter?
#47
zmertens
closed
6 years ago
1
error while loading shared libraries: libdawg2.so.1
#46
Morteza-M-Saber
closed
6 years ago
14
Make compilation error
#45
Morteza-M-Saber
closed
6 years ago
4
Fix casting typo and add rna example
#44
zmertens
closed
6 years ago
2
Add static linking for libraries in tests
#43
zmertens
closed
6 years ago
1
Editorconfig
#42
zmertens
closed
6 years ago
1
Add editorconfig
#41
zmertens
closed
6 years ago
1
Add more documentation
#40
zmertens
closed
6 years ago
1
External Modules for DAWG (Python, JS)
#39
zmertens
closed
5 years ago
0
Investigate multithreaded reps
#38
zmertens
closed
6 years ago
0
Compiling with Boost optional
#37
zmertens
closed
6 years ago
0
Init commit for adding root sequence and rate from user
#36
zmertens
closed
6 years ago
17
Allow user to specify root sequence
#35
zmertens
closed
6 years ago
6
Init doxygen and hook it into CMake
#34
zmertens
closed
7 years ago
3
Investigate Builder pattern
#33
zmertens
closed
6 years ago
1
ensure values are initialized
#32
zmertens
closed
7 years ago
2
Add external project and development options
#31
zmertens
closed
7 years ago
5
Update dawgma.xmh
#30
zmertens
closed
7 years ago
2
Indel Param Max Ins / Del problems when not specified by user
#29
zmertens
closed
7 years ago
1
Global.xmh does not defined an output format macro
#28
zmertens
closed
7 years ago
0
Add Gperftools
#27
zmertens
closed
7 years ago
4
Fix libdawg linking error on Windows
#26
zmertens
closed
6 years ago
1
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