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Clinical-Genomics
/
preClinVar
A ClinVar API submission helper written in FastAPI
MIT License
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Prepare major version 1.0
#35
northwestwitch
closed
2 years ago
1
Pass api key as form field and not query arg
#34
northwestwitch
closed
2 years ago
2
Add tests for validate and dry-run endpoints
#33
northwestwitch
closed
2 years ago
1
Adds Codecov badge and fixes Codecov comments on PRs
#32
northwestwitch
closed
2 years ago
2
Codecov comments on PRs don't work
#31
northwestwitch
closed
2 years ago
0
Increase coverage
#30
northwestwitch
closed
2 years ago
0
Add tests for validate and dry run endpoints
#29
northwestwitch
closed
2 years ago
0
Created DockerHub build and push actions for stage and prod app
#28
northwestwitch
closed
2 years ago
2
Create GitHub actions to push stage and prod containers to Docker Hub
#27
northwestwitch
closed
2 years ago
0
Created a docker-compose file and fixed the Dockerfile to work with it
#26
northwestwitch
closed
2 years ago
2
Created a Dockerfile for running the repo with gunicorn
#25
northwestwitch
closed
2 years ago
1
Fix dry run endpoint when ClinVar returns an empty 204 response
#24
northwestwitch
closed
2 years ago
2
Broken dry-run endpoint
#23
northwestwitch
closed
2 years ago
0
Create Docker and docker-compose files
#22
northwestwitch
closed
2 years ago
0
Describe available endpoints and how to use them
#21
northwestwitch
closed
2 years ago
0
Fix parsing of CaseData csv with more than one individuals associated to the same variant
#20
northwestwitch
closed
2 years ago
2
Pass api keys as form fields and not as args in requests
#19
northwestwitch
closed
2 years ago
2
Fix parsing when more than one individual in casedata is associated to the same variant
#18
northwestwitch
closed
2 years ago
0
Fix requests in proxy endpoints and parsing of observedIn
#17
northwestwitch
closed
2 years ago
1
Missing observedIn key/value in demo submission
#16
northwestwitch
closed
2 years ago
0
Added proxy endpoint to ClinVar API submission dry run
#15
northwestwitch
closed
2 years ago
1
Update submission schema including last releleased API schema (draft-07)
#14
northwestwitch
closed
2 years ago
1
GitHub tests
#13
northwestwitch
closed
2 years ago
1
New API endpoint in ClinVar to test submissions
#12
northwestwitch
opened
2 years ago
0
Change in the ClinVar API
#11
northwestwitch
closed
2 years ago
1
Convert csv files to json submission, with validation against schema
#10
northwestwitch
closed
2 years ago
1
Create tests GitHub action
#9
northwestwitch
closed
2 years ago
0
Parse all csv fields and create a dictionary according the the official submission schema
#8
northwestwitch
closed
2 years ago
0
Set and display logging level
#7
northwestwitch
closed
2 years ago
1
Created endpoint to accept a POST request containing Variant and CaseData csv file and the code to read them
#6
northwestwitch
closed
2 years ago
0
Create an endpoint that accepts a json object containing raw submission data and returns a validated submission object
#5
northwestwitch
closed
2 years ago
0
Create an endpoint that parses a request containing csv files and transforms them to a validated json submission object
#4
northwestwitch
closed
2 years ago
0
Get a key for the API access
#3
northwestwitch
closed
2 years ago
1
Add schema and demo
#2
northwestwitch
closed
2 years ago
0
Create an organization for Clinical Genomics in ClinVar
#1
northwestwitch
closed
2 years ago
1
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