CoBrALab RABIES issues - Githubissues

CoBrALab / RABIES

fMRI preprocessing pipeline and analysis tools adapted for rodent images. Visit the full documentation at https://rabies.readthedocs.io/en/stable/

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Explore orthogonalizing nuisance regressors with respect to noise ICs from ICA-AROMA

#386 danyluik opened 6 days ago
0
Apply STC prior to de-oblique

#385 Gab-D-G opened 1 week ago
0
Add CITATION.cff

#384 Gab-D-G closed 4 weeks ago
3
--scan_list doesn't exist

#383 Gab-D-G closed 1 month ago
0
Cite publication

#382 Gab-D-G closed 1 month ago
1
An error occurred while using RABIES preprocessing: subprocess.CalledProcessError

#381 JianhuiFeng06 opened 1 month ago
1
No output in /analysis_datasink if --data_diagnosis tag is excluded

#378 david-roper closed 2 months ago
2
Failure to Inherit Unbiased Template

#376 JS650 opened 3 months ago
0
Phase encoding

#375 Gab-D-G opened 3 months ago
2
Remove default atlas/template, require explicit selection

#372 gdevenyi opened 4 months ago
0
Integrate Bruker to BIDS converter

#368 Gab-D-G opened 4 months ago
2
number of shrink factors does nto match the number of levels

#367 jazlynntan closed 5 months ago
5
Weird registration issue during preprocessing

#365 geowk closed 6 months ago
2
the brain mask is smaller than the template

#359 lvqianmri opened 7 months ago
2
Error during preprocessing and InhoCorrection with RABIES

#356 geowk opened 7 months ago
9
Implemented a --group_avg_prior to compute prior networks from the gr…

#355 Gab-D-G closed 7 months ago
0
Add --bgimage to MELODIC reports

#353 Gab-D-G opened 7 months ago
0
Implement two-level modelbuild for longitudinal registration (--two_level)

#352 Gab-D-G opened 8 months ago
1
Bump scikit-learn from 0.24.1 to 1.0.1

#351 dependabot[bot] opened 8 months ago
0
preprocessing Bus error

#349 lshoheisel opened 8 months ago
2
Bump jinja2 from 3.1.1 to 3.1.3 in /docs

#347 dependabot[bot] opened 8 months ago
0
For multi-parameter options, it is no longer needed to fill every par…

#345 Gab-D-G closed 9 months ago
0
No b spline2

#344 Gab-D-G closed 9 months ago
0
Inconsistent voxel resolution in the input images will causes errors in analysis stage

#343 Gab-D-G opened 10 months ago
0
Documentation: Get users to check preprocessing QC images

#342 gdevenyi opened 10 months ago
0
Documentation: Get users to check input orientaitons

#341 gdevenyi opened 10 months ago
1
Indexing error during analysis (load_sub_input_dict)

#340 essheh opened 10 months ago
10
Make antsRegistration --fast optional

#339 Gab-D-G opened 10 months ago
0
Atlas file inputted into RABIES differs in orientation and fov to the output files of RABIES.

#338 KarisColyerPatel opened 10 months ago
11
Correct bug, robust inho cor wasn't working because of the new inheri…

#337 Gab-D-G closed 10 months ago
0
correct spelling for --group_ica

#336 Gab-D-G closed 11 months ago
0
Issue when running ICA-AROMA

#335 KarisColyerPatel opened 11 months ago
3
Documentation

#334 Gab-D-G closed 11 months ago
0
Extension of QC to be better adapted to SBC/FC matrix

#333 Gab-D-G opened 11 months ago
0
Implemented an option to inherit a previous modelbuild and atlas regi…

#332 Gab-D-G closed 12 months ago
0
Documentation

#331 Gab-D-G closed 11 months ago
0
Forgot to import numpy

#330 Gab-D-G closed 12 months ago
0
Implemented novel oblique correction using nibabel which only modifie…

#329 Gab-D-G closed 12 months ago
0
Check if oblique before applying --oblique2card

#328 Gab-D-G closed 12 months ago
0
Correct oblique

#327 Gab-D-G closed 1 year ago
3
Improve testing

#326 Gab-D-G closed 1 year ago
0
Build and upload singularity image on release

#325 gdevenyi opened 1 year ago
0
Complete testing upon container build.

#324 Gab-D-G closed 1 year ago
0
Improve testing

#323 Gab-D-G closed 1 year ago
0
fix: Set FSL environment variables because conda install doesn't

#322 gdevenyi closed 1 year ago
0
After smoothing, the image is divided by the smoothed mask to correct…

#321 Gab-D-G closed 1 year ago
0
The spatial smoothing step creates data point outside the brain mask

#320 Gab-D-G closed 1 year ago
2
New guidelines for developpers

#319 Gab-D-G closed 12 months ago
2
Docu updates

#318 Gab-D-G closed 1 year ago
0
Flexible pybids

#317 Gab-D-G closed 1 year ago
0