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Bump requests from 2.22.0 to 2.31.0
#150
dependabot[bot]
opened
1 year ago
0
Generate metadata for SCXA projects
#149
jessebrennan
closed
4 years ago
0
Extend cell_count.py to count genes and compare diff counting method results (#144)
#148
dsotirho-ucsc
closed
4 years ago
1
Add SCXA projects
#147
jessebrennan
closed
4 years ago
1
fix expected row lengths
#146
nadove-ucsc
closed
4 years ago
2
Row length assertions fire
#145
hannes-ucsc
closed
4 years ago
0
Extend cell_count.py to count genes and compare diff counting method results
#144
dsotirho-ucsc
closed
4 years ago
0
Issues/noah aviel dove/fix more headers
#143
nadove-ucsc
closed
4 years ago
1
Missing header line in some barcodes.tsv.gz and genes.tsv.gz files
#142
dsotirho-ucsc
closed
4 years ago
3
Standardize width of QC plots to 600 pixels
#141
theathorn
closed
4 years ago
1
Add conversion of SCXA matrices
#140
hannes-ucsc
closed
4 years ago
0
Populated Paired Ends Value/Column
#139
GPelayo
closed
4 years ago
0
Issues/noah aviel dove/135 integrate tsne
#138
nadove-ucsc
closed
4 years ago
0
Issues/noah aviel dove/123 cellfiles path
#137
nadove-ucsc
closed
4 years ago
2
Replace latin-1 characters so that gene names are consistent
#136
achave11-ucsc
closed
4 years ago
2
Move tsne script into load-project repo.
#135
theathorn
closed
4 years ago
1
fix broken target uuids
#134
nadove-ucsc
closed
4 years ago
0
get_target_project_dirs does not work with UUIDS
#133
nadove-ucsc
closed
4 years ago
1
Missing file extensions in h5 conversion output
#132
nadove-ucsc
closed
4 years ago
1
atomic_gzip_file truncates file contents
#131
nadove-ucsc
closed
4 years ago
1
Trim whitespace from csv value when creating mtx (#129)
#130
dsotirho-ucsc
closed
4 years ago
0
Trim whitespace from csv value when creating mtx
#129
dsotirho-ucsc
closed
4 years ago
0
Add 'featurename' column to h5 to matrix transformer a.k.a gene names
#128
achave11-ucsc
closed
4 years ago
1
Store cell count in a per project stats file (#122)
#127
dsotirho-ucsc
closed
4 years ago
0
filter header row from cell file
#126
nadove-ucsc
closed
4 years ago
0
First argument to IndividualCellFiles constructor should be as specific as possible
#125
hannes-ucsc
closed
4 years ago
2
Add static matrices and metadata to `make report` (#120)
#124
dsotirho-ucsc
closed
4 years ago
0
Path to converted per-cell matrices should reflect complete path relative to `geo` dir
#123
hannes-ucsc
closed
4 years ago
7
Eliminate `cell_counts.json`
#122
hannes-ucsc
closed
4 years ago
0
Decide what to do with the GEO projects that have an HCA matrix
#121
hannes-ucsc
opened
4 years ago
1
Add support for static matrices and metadata to `make report`
#120
hannes-ucsc
closed
4 years ago
0
`make matrices` fails for GSE113197
#119
hannes-ucsc
closed
4 years ago
1
Missing metadata for certain GEO projects
#118
hannes-ucsc
opened
4 years ago
0
Cite tsne plot sources.
#117
DailyDreaming
closed
4 years ago
1
Log mtx inconsistencies in count_cells.py (#108)
#116
dsotirho-ucsc
closed
4 years ago
0
Issues/noah aviel dove/43 cat cell files
#115
nadove-ucsc
closed
4 years ago
0
Handle latin1 Excel quotes in GSE127969_counts_TPM_ALL.csv.gz
#114
theathorn
closed
4 years ago
1
Reconcile differences between methods to generate cell counts
#113
theathorn
opened
4 years ago
3
Add gene names to matrices converted from CSV
#112
theathorn
opened
4 years ago
0
Import SCXA projects
#111
hannes-ucsc
closed
4 years ago
1
Add some previously skipped projects
#110
jessebrennan
closed
4 years ago
1
Replace 'path.as_posix()' usage with 'str(path)'
#109
achave11-ucsc
closed
4 years ago
0
Log mtx inconsistencies in count_cells.py
#108
hannes-ucsc
closed
4 years ago
0
Create QC plots for matrices added this week
#107
hannes-ucsc
opened
4 years ago
2
Improve idempotency for matrix zip generation
#106
jessebrennan
opened
4 years ago
0
Add gene names to matrices converted from H5
#105
hannes-ucsc
closed
4 years ago
1
Parallelize MTX generation (#86)
#104
dsotirho-ucsc
closed
4 years ago
2
Create individual users on the instance
#103
hannes-ucsc
closed
4 years ago
0
Use globs to compact the explicit lists of paths in convert_matrices
#102
hannes-ucsc
opened
4 years ago
0
Replace uses of `path.as_posix()` with `str(path)`
#101
hannes-ucsc
closed
4 years ago
0
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