DavisLaboratory singscore issues

DavisLaboratory / singscore

An R/Bioconductor package that implements a single-sample molecular phenotyping approach

https://davislaboratory.github.io/singscore/

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issues

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SimpleScore() Output Interpretation

#42 xyang2uchicago opened 1 week ago
0
[feature request] allow DelayedArray as input to singscore

#41 stemangiola opened 1 month ago
0
Using singscore for comparison between different datasets

#40 ICA-D closed 1 year ago
1
Install from Github fails on RStudio

#39 quarkstar-codes closed 1 year ago
1
How do you calculate "dispersion"?

#38 BirongZhang closed 1 year ago
1
Significance of scores

#37 faraz89 closed 1 year ago
1
generateNull() function used with multiScore()

#36 shadihames closed 1 year ago
1
Unable to create a gene set

#35 Bioinformatika-BWID closed 2 years ago
2
Error running generateNull function

#34 Dagsbio closed 1 year ago
7
Error row names contain missing values

#33 bihuimel closed 2 years ago
3
Difficult to understand the difference between singscore and ssGSEA

#32 chuiqin closed 2 years ago
1
Missing dependency: hexbin

#31 HenrikBengtsson closed 3 years ago
1
Can singscore handle missing values

#30 evrama opened 3 years ago
2
Equivalent of Leading edge genes in GSEA

#29 hd00ljy closed 3 years ago
2
getStableGenes function not in namespace

#28 ruxi closed 3 years ago
1
Fix Gene Error if downSet is NULL

#27 DarioS closed 3 years ago
1
Genes Not Unique Error

#26 DarioS closed 3 years ago
3
Usage of checkGenes

#25 DarioS closed 3 years ago
1
Abundance Matrix Preprocessing

#24 DarioS closed 3 years ago
1
Overview Plot Request

#23 DarioS closed 3 years ago
1
centerScore question

#22 dodoflyy closed 3 years ago
4
generateNull unable to get reproducible results

#21 dbdimitrov closed 3 years ago
6
Again) generateNull

#20 hyojin0912 closed 3 years ago
3
MSigDB gene sets can be used for singscore?

#19 JasmineUT closed 3 years ago
1
GeneSet issue with singscore

#18 NMaziak closed 4 years ago
1
Is singscore usable on single cell data?

#17 kvittingseerup opened 4 years ago
5
Breaking ties during ranking and theoretical minimum rank

#16 messersc closed 4 years ago
1
Error in "generateNull"

#15 hyojin0912 closed 4 years ago
7
Error when genes in gene signatures are absent in expression matrix

#14 ktmf1991 closed 4 years ago
1
Issue 7

#13 bhuvad closed 5 years ago
0
automatically select the number of bins as sqrt(num_obs)

#12 bhuvad closed 5 years ago
0
Issue 10

#11 bhuvad closed 5 years ago
0
Allow continous annotations in plotting functions

#10 bhuvad closed 5 years ago
0
plotScoreLandscape: compute the number of bins from the data

#9 bhuvad closed 5 years ago
0
annot argument issues in plotDispersion

#8 annaquaglieri16 closed 5 years ago
1
Lack of functionality for many gene sets

#7 andreyurch closed 5 years ago
11
singscore

#6 ruqianl closed 6 years ago
0
Example for the plotScoreLandscape in the vignette

#5 MomenehForoutan closed 5 years ago
0
consistency between the vignette and overview page on GitHub

#4 MomenehForoutan closed 5 years ago
1
minor correction in loading data for vignette

#3 MomenehForoutan closed 5 years ago
0
Do we really need BiocParallel for generateNull()?

#2 MomenehForoutan closed 5 years ago
2
Issue with centering upScores

#1 MomenehForoutan closed 5 years ago
1