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DiODeProject
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MuMoT
Multiscale Modelling Tool - mathematical modelling without the maths
https://mumot.readthedocs.io/
GNU General Public License v3.0
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Reduce runtime of CI jobs?
#366
willfurnass
opened
4 years ago
0
Partially revert PR 350 as breaks View<->Figure linkages
#365
willfurnass
closed
4 years ago
0
Add class hierarchy diagram to docs
#364
willfurnass
closed
4 years ago
2
tox.ini: find Notebooks to run with nbval-lax using unix find cmd (WIP)
#363
willfurnass
opened
4 years ago
1
Guard against iopub rate limiting warnings
#362
willfurnass
closed
4 years ago
0
Possible issue with ipykernel or tornado event loop
#361
willfurnass
closed
4 years ago
2
Update version number and contributors for first release patch
#360
jarmarshall
closed
4 years ago
1
Increase notebook message rate limit
#359
jarmarshall
closed
4 years ago
0
Suppress matplotlib deprecation warning in nested multicontrollers
#358
jarmarshall
closed
4 years ago
0
tox.ini: ensure pytest does not bail due to spaces in path to mumot pkg dir not being escaped
#357
willfurnass
closed
4 years ago
0
tox: pytest bails due to spaces in one of its args not being escaped
#356
willfurnass
closed
4 years ago
0
Muticontroller plot warning
#355
jarmarshall
opened
4 years ago
1
Fix sum to1 state
#354
joefresna
closed
4 years ago
1
Multicontrollers missing some advanced options
#353
jarmarshall
opened
4 years ago
0
Clean exceptions
#352
joefresna
opened
4 years ago
3
Missing rate
#351
joefresna
closed
4 years ago
3
Unpin package dependencies
#350
jarmarshall
closed
4 years ago
15
Unpin package dependencies
#349
jarmarshall
closed
4 years ago
9
Replace latex2sympy's process_sympy with sympy's parse_latex
#348
willfurnass
closed
4 years ago
3
Patched SSA bug
#347
joefresna
closed
5 years ago
1
SSA computation is not correct for reactions with multiple occurrences of the same rate
#346
joefresna
closed
5 years ago
0
Docs: guard against accidentally installing from PyPI instead of Git clone
#345
willfurnass
closed
5 years ago
2
Unpin sympy version (WIP)
#344
willfurnass
closed
5 years ago
5
Unpin sympy version (WIP)
#343
willfurnass
closed
5 years ago
6
Increase nbval cell exec timeout
#342
willfurnass
closed
4 years ago
1
Enable testing with Python 3.7 with tox and travis-ci.org
#341
willfurnass
closed
5 years ago
0
Remove matplotlib.pyplot.hold(True) calls and unpin matplotlib version (WIP)
#340
willfurnass
closed
5 years ago
1
Add unit tests
#339
willfurnass
opened
5 years ago
0
Set minimum version of PyDSTool, allowing scipy version to be unpinned
#338
willfurnass
closed
5 years ago
4
Refactor into separate modules (and lint)
#337
willfurnass
closed
5 years ago
10
Visualise noise in 3d stream plot
#336
jarmarshall
opened
5 years ago
0
Document 1d and 3d stream plots
#335
jarmarshall
opened
5 years ago
0
Add a small number of type hints
#334
willfurnass
closed
5 years ago
1
Replace global var figcounter with matplotlib.pyplot.get_fignums()?
#333
willfurnass
opened
5 years ago
1
Remove redundant _buildFigOLD function
#332
willfurnass
closed
5 years ago
1
1d stream
#331
jarmarshall
closed
5 years ago
0
3d stream
#330
jarmarshall
closed
5 years ago
1
1d stream plot does not appear in full after re-generation using sliders
#329
tbose1
opened
5 years ago
0
Add type hints
#328
willfurnass
opened
5 years ago
0
Update contributors
#327
jarmarshall
opened
5 years ago
2
Enhance random walk computation
#326
jarmarshall
opened
5 years ago
0
Test suite: run all notebooks in one or more dirs rather than explicitly named notebooks
#325
willfurnass
opened
5 years ago
9
Greek letters should be used consistently in all functions
#324
joefresna
opened
5 years ago
2
3d stream
#323
robden820
closed
5 years ago
0
Type error in SSA after substitution of rates
#322
tbose1
closed
4 years ago
18
Some rates are not properly handled in some models... probably a parser issue
#321
joefresna
closed
4 years ago
1
Consider pointing binder icon to latest release branch
#320
jarmarshall
opened
5 years ago
2
Consider DOI release assignment strategy
#319
jarmarshall
opened
5 years ago
1
SSA/multiagent force initial state widgets to sum to 1 even if system size is not constant
#318
jarmarshall
closed
4 years ago
16
initial state widgets forced to sum to 1 even if not appropriate / incorrect error message methodology used
#317
jarmarshall
closed
4 years ago
1
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