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EBI-Metagenomics
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workflow-is-cwl
This repository contains CWL descriptions of the various tools which will allow you to build workflows for the annotation of transcripts
https://www.elixir-europe.org/
Apache License 2.0
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switch to https://schema.org/version/latest/schema.rdf
#44
mr-c
opened
4 years ago
0
Merged dev into master.
#43
mscheremetjew
closed
5 years ago
0
Updated cwlviewer urls.
#42
mscheremetjew
closed
5 years ago
0
Dev
#41
mscheremetjew
closed
5 years ago
0
Merge dev into master.
#40
mscheremetjew
closed
5 years ago
0
Fixed duplicated naming/id issue.
#39
mscheremetjew
closed
5 years ago
0
Merged dev into master.
#38
mscheremetjew
closed
5 years ago
0
Merged assembly branch into dev.
#37
mscheremetjew
closed
5 years ago
0
Dev
#36
mscheremetjew
closed
5 years ago
0
Merged latest fixes into master.
#35
mscheremetjew
closed
5 years ago
0
cwlexec: InterProScan5 result file is not mapped to the output binding
#34
mscheremetjew
opened
5 years ago
0
Dev
#33
mscheremetjew
closed
5 years ago
0
Validating the complete assembly workflow
#32
arnaudmeng
closed
5 years ago
2
Merged dev into master
#31
mscheremetjew
closed
5 years ago
0
Merged master into assembly branch.
#30
mscheremetjew
closed
5 years ago
0
Add gx hints.
#29
ghost
closed
5 years ago
1
Add hints
#28
ghost
closed
5 years ago
1
Add gx hints.
#27
ghost
closed
5 years ago
1
Merged dev branch into master
#26
mscheremetjew
closed
5 years ago
1
avoid space in identifier
#25
stain
closed
5 years ago
10
Test and review Trinity container
#24
mscheremetjew
opened
5 years ago
0
Select, test and review Trimmomatic container
#23
mscheremetjew
opened
5 years ago
3
Merged dev into assembly branch
#22
mscheremetjew
closed
5 years ago
0
Dev
#21
mscheremetjew
closed
5 years ago
0
Dev
#20
mscheremetjew
closed
5 years ago
0
Merged workflow fixes into assembly
#19
mscheremetjew
closed
5 years ago
0
BUSCO: Backslash char is not supported in FASTA header - Add FASTA header cleaning step
#18
mscheremetjew
closed
5 years ago
1
Merged branch workflow-fixes into dev.
#17
mscheremetjew
closed
5 years ago
0
Merged branch workflow-fixes into master.
#16
mscheremetjew
closed
5 years ago
0
Merge dev into assembly.
#15
mscheremetjew
closed
5 years ago
0
Merge dev into master.
#14
mscheremetjew
closed
6 years ago
0
fix the SBG namespaces
#13
mr-c
closed
6 years ago
3
InterProScan: Still don;t have a working version of a container
#12
mscheremetjew
closed
6 years ago
1
BUSCO: Docker container doesn't write any results onto the local file system!
#11
mscheremetjew
closed
6 years ago
3
Transrate: Improve Docker image
#10
mscheremetjew
closed
5 years ago
8
Transrate: Add test inputs and expected outputs
#9
mscheremetjew
opened
6 years ago
1
Transrate: Command line tool version with local installation is not working using cwl-runner
#8
mscheremetjew
closed
5 years ago
1
Trimmomatic: Added Docker requirement and test the container
#7
mscheremetjew
opened
6 years ago
1
Trimmomatic: Add test inputs and expected outputs
#6
mscheremetjew
opened
6 years ago
1
Trinity: Set up integration test
#5
mscheremetjew
opened
6 years ago
0
Trinity: Add test inputs and expected outputs
#4
mscheremetjew
closed
6 years ago
4
FastQC: Create Docker container for version 0.11.7
#3
mscheremetjew
closed
6 years ago
2
Various additions to workflow-is-cwl
#2
hmenager
closed
6 years ago
0
diamond makedb fix + added expected tool outputs.
#1
mscheremetjew
closed
6 years ago
0