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EBI-Metagenomics / workflow-is-cwl

This repository contains CWL descriptions of the various tools which will allow you to build workflows for the annotation of transcripts
https://www.elixir-europe.org/
Apache License 2.0
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common-workflow-language cwl cwl-description cwl-descriptions cwl-workflow diamond marine phmmer transcriptome transdecoder workflow

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ELIXIR Workflow Implementation Study - CWL descriptions

This repository contains CWL descriptions of the various tools (TransDecoder, Diamond, InterProScan and PHMMER), which allows you to build workflows for the assembly of marine eukaryotic metatranscriptomes and the annotation of those.

Marine eukaryotic metatranscriptome assembly workflow (paired-end version)

Marine eukaryotic metatranscriptome assembly workflow (single-end version)

Annotation workflow