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### Description of feature
Dear team,
Sometimes, we don’t have a genome.fasta + gene.gff3 but only have transcriptome assemblies. Could you add a new feature to allow genepal to annotate transcrip…
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### Ask away!
Hi:
It is necessary to use Pinfish to build a non-redundant transcriptome set. Is transcriptome de-redundancy necessary?
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Hello, I'm sorry to bother you. May I know how to do transcriptome prediction now that I only have full-length transcriptome data?
I have seen many articles on downstreaming the data and then using …
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### Ask away!
I have tried with both fastq , uBMA and BAM inputs but unable make any progress beyond this step.
I have used the below way of running the pipeline on my last try. But no luck. The sa…
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## Bug report
### Expected behavior and actual behavior
I would anticipate that passing arguments such as `--minimap2_args '-k15'` would result in the parameter `minimap2_args` being set to t…
cjw85 updated
1 month ago
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Hi,
I am trying to use GrainGENIE to impute gene expression from my blood RNAseq. I am wondering if there are any requirements for the input blood transcriptome data frame, for example, would the r…
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Hi:
The two data are two different species, so the single cell data are different, how about the possibility of de-matching the two different single cell transcriptome data with the data on the spa…
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Need Uniprot IDs in output for GO enrichment analysis
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Hi!
I am trying to make UMICollapse the default tool in one of the popular RNAseq analysis pipelines -- https://github.com/nf-core/rnaseq/issues/1087.
Not sure if this is covered by #5 already, …
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Recently upgraded IGV from 2.17.4 to 2.18.4. With this update, we noticed that IGV session made with whole transcriptome bam files, would not load correctly.
They would load initially, but any sub…