EBIvariation trait-curation issues

EBIvariation / trait-curation

A web application for manual curation of trait-to-ontology mappings, including provenance and integration with EBI SPOT stack.

Apache License 2.0

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issues

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Set up deployment in the Embassy cloud

#69 tskir closed 4 years ago
14
Figure out what to do with multiple mappings

#68 tskir opened 4 years ago
1
Refactor ClinVar module and add atomic transactions

#67 joj0s closed 4 years ago
0
Review term functionality

#66 joj0s closed 4 years ago
0
Log/track all terms which have “Obsolete” in their name, but are not marked as obsolete in OLS responses

#65 tskir opened 4 years ago
4
Implement the capability to manually move the term back into the “unmapped” state

#64 tskir opened 4 years ago
0
Suggestion of existing or new terms

#63 joj0s closed 4 years ago
3
Implement authentication

#62 joj0s closed 4 years ago
2
Set up a proper deployment environment

#61 tskir closed 4 years ago
6
Background tasks using Celery

#60 joj0s closed 4 years ago
7
ZOOMA import times out intermittently

#59 tskir closed 4 years ago
16
Production launch checklist

#58 tskir opened 4 years ago
1
Configure timezones

#57 joj0s closed 4 years ago
7
Mapping suggestion table and manual mapping functionality

#56 joj0s closed 4 years ago
0
Refactor ClinVar module

#55 joj0s closed 4 years ago
0
Implement user authentication

#54 tskir closed 4 years ago
11
Design user authentication interface

#53 tskir closed 4 years ago
8
Rewrite all database update operations using transactions

#52 tskir closed 4 years ago
4
Dummy data import

#51 joj0s closed 4 years ago
1
Create a configuration (admin) page for various variables

#50 joj0s opened 4 years ago
7
Query ZOOMA to get possible mappings

#49 joj0s closed 4 years ago
8
Prioritise traits which are linked to “NT expansion” variants

#48 tskir opened 4 years ago
2
Fix incorrect background color on main page buttons

#47 joj0s closed 4 years ago
0
Implement dummy data importing for testing

#46 joj0s closed 4 years ago
4
Follow up actions

#45 joj0s closed 4 years ago
1
Port the logic of the trait mapping pipeline

#44 tskir closed 4 years ago
30
Trait sidebar and main trait information

#43 joj0s closed 4 years ago
2
Make a combination of text/status filters on the main page a bookmarkable URL

#42 tskir opened 4 years ago
2
Research approaches of making certain fields (statuses) computable based on other fields

#41 tskir closed 4 years ago
11
Small follow-up actions from code reviews

#40 tskir closed 4 years ago
1
ClinVar data fetching and parsing

#39 joj0s closed 4 years ago
1
Highlight parts of the text query which matched field values

#38 tskir opened 4 years ago
0
Implement the ability to mark traits as "invalid"

#37 tskir opened 4 years ago
0
Filters for text searching and statuses

#36 joj0s closed 4 years ago
3
Prototype

#35 joj0s closed 4 years ago
2
Set up automated periodic updates of external datasources

#34 tskir closed 4 years ago
10
Design a page to display status & trigger external imports

#32 tskir closed 4 years ago
7
Implement querying OLS to update term status

#31 tskir closed 4 years ago
4
Implement querying ZOOMA to get possible mappings for a trait

#30 tskir closed 4 years ago
8
Implement the comments section

#29 tskir closed 4 years ago
0
Implement the history section

#28 tskir closed 4 years ago
2
Implement the “Create new term” section

#27 tskir closed 4 years ago
0
Implement the “Suggest existing term” section

#26 tskir closed 4 years ago
2
Implement the review functionality

#25 tskir closed 4 years ago
6
Implement the side bar

#24 tskir closed 4 years ago
0
Implement the block with mappings + “Map to selection” button

#23 tskir closed 4 years ago
2
Redesign the representation of current + suggested mappings

#22 tskir closed 4 years ago
8
Display main information on a single trait page

#21 tskir closed 4 years ago
2
Implement trait view table

#20 tskir closed 4 years ago
2
Implement “Export as spreadsheet” button

#19 tskir opened 4 years ago
0

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