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EBIvariation
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vcf-validator
Validation suite for Variant Call Format (VCF) files, implemented using C++11
Apache License 2.0
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39
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Request: Print version number to console
#100
StephenTanner
closed
6 years ago
1
SAMPLE metadata wrongly formatted?
#99
sigven
closed
4 years ago
3
wget not requiring valid certificates for ODB
#98
cyenyxe
closed
6 years ago
0
Add version command-line option
#97
Anishka0107
closed
6 years ago
0
Create wrapper for simplifying usage of find algorithm
#96
Anishka0107
closed
6 years ago
0
Add summary report for errors & warnings
#95
Anishka0107
closed
6 years ago
0
WISH: `--version` to display version of vcf_* tools
#94
HenrikBengtsson
closed
6 years ago
1
EVA-408 Benchmarking for different file profiles
#93
jmmut
closed
4 years ago
1
Not all warnings are tested
#92
Anishka0107
closed
4 years ago
5
Add support for gVCF files
#91
Anishka0107
closed
6 years ago
0
Use debian base in docker
#90
Anishka0107
closed
6 years ago
0
Add warning for confidence interval tags
#89
Anishka0107
closed
6 years ago
1
Use Alpine base in docker
#88
Anishka0107
closed
6 years ago
1
Reduce size of Docker image
#87
cyenyxe
closed
6 years ago
1
EVA-152 Support gVCF files
#86
cyenyxe
closed
6 years ago
0
EVA-494 include error counts in the report
#85
jmmut
closed
6 years ago
0
Homogeneous logging and error reporting
#84
Anishka0107
closed
6 years ago
1
Refactor the Ragel machines' code
#83
Anishka0107
closed
6 years ago
0
Simplify build for OS X users (docker based)
#82
Anishka0107
closed
5 years ago
3
Code maintenance
#81
Anishka0107
closed
6 years ago
0
Add automatic meta header fix for predefined tags in debugulator
#80
Anishka0107
closed
6 years ago
0
Simplify check for non-symbolic alternate allele
#79
Anishka0107
closed
6 years ago
0
Add new data line fixing functionality in the debugulator
#78
Anishka0107
closed
6 years ago
0
Extract string literals to constants, as they are prone to typos
#77
Anishka0107
closed
6 years ago
1
Implement duplicates check for other fields
#76
Anishka0107
closed
6 years ago
0
Error: AD field expects 3, found 2
#75
thomasyu888
closed
7 years ago
2
Add functionality to check that predefined tags in data lines match the VCF spec
#74
Anishka0107
closed
6 years ago
0
Meta header checks for INFO and FORMAT SV tags
#73
Anishka0107
closed
7 years ago
1
Extracted semantic checks from ragel and added strict validation
#72
Anishka0107
closed
7 years ago
0
Extracted reusable components of the ragel machines
#71
Anishka0107
closed
7 years ago
0
Added Number and Type checks for FORMAT predefined tags
#70
Anishka0107
closed
7 years ago
0
Adding meta line checks for predefined tags of INFO
#69
Anishka0107
closed
7 years ago
1
Splitted fixer.hpp contents into fixer.cpp and fixer.hpp files
#68
Anishka0107
closed
7 years ago
0
Renamed main.cpp file to validator_main.cpp
#67
Anishka0107
closed
7 years ago
0
Extracted record.cpp check blocks into private methods
#66
Anishka0107
closed
7 years ago
4
EVA-720 Detect VCF version automatically
#65
jmmut
closed
7 years ago
0
Added single-line duplicate fields check for FORMAT
#64
Anishka0107
closed
7 years ago
6
Added single-line duplicate values check for ID
#63
Anishka0107
closed
7 years ago
13
EVA-672 fixed IgnoreParsePolicy segfault on empty record
#62
jmmut
closed
7 years ago
0
EVA-638 VCF Validator always expects GT field
#61
jmmut
closed
7 years ago
0
EVA-530 part 2/2: report lack of newline before EOF
#60
jmmut
closed
7 years ago
0
fix bug: string split on empty strings
#59
jmmut
closed
7 years ago
0
Accept INFO CIGAR strings per alt
#58
sambrightman
closed
7 years ago
0
Doesn't seem to handle INFO flags correctly
#57
sambrightman
closed
7 years ago
6
Info CIGAR value is not an alphanumeric string compliant with the SAM specification
#56
sambrightman
closed
7 years ago
2
achieved constant memory usage by sqlite
#55
jmmut
closed
7 years ago
0
EVA-499 remove SqliteReport and ErrorCodes
#54
jmmut
closed
7 years ago
1
Release v0.4
#53
cyenyxe
closed
7 years ago
0
EVA-470 Summary report independent from checks
#52
jmmut
closed
7 years ago
0
EVA-452 Docker image for static builds
#51
cyenyxe
closed
7 years ago
0
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