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EBIvariation
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vcf-validator
Validation suite for Variant Call Format (VCF) files, implemented using C++11
Apache License 2.0
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39
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Assembly Checker Tool
#150
srbcheema1
closed
5 years ago
2
Incorrect complaint about GP format field in vcf 4.2
#149
kscheffler
closed
4 years ago
2
No newline error at the end of the VCF
#148
elowy01
closed
5 years ago
7
Improvement in functionality of reading compressed files
#147
srbcheema1
closed
5 years ago
0
Updates supported compressed file and supported platform details
#146
srbcheema1
closed
5 years ago
0
Pipe output to custom file ?
#145
sigven
closed
5 years ago
8
Make the mac build easier
#144
srbcheema1
closed
6 years ago
0
break if file is not written
#143
srbcheema1
closed
6 years ago
1
Does not fail when output folder does not have write permission
#142
j-coll
closed
5 years ago
2
Simplyfying build for windows
#141
srbcheema1
closed
5 years ago
1
Fix cache
#140
srbcheema1
closed
6 years ago
0
Code and test cases for assembly checker
#139
ManeshNarayan
closed
4 years ago
1
Adds the functionality to report tool version
#138
ManeshNarayan
opened
6 years ago
0
Add tool version
#137
ManeshNarayan
closed
6 years ago
0
Simplifying build for mac
#136
srbcheema1
closed
6 years ago
6
Add tool version
#135
srbcheema1
closed
4 years ago
2
Adding tool version number to the validator report
#134
cyenyxe
closed
4 years ago
4
Stdout option for report
#133
srbcheema1
closed
6 years ago
1
Add stdout in report options
#132
srbcheema1
closed
6 years ago
4
Add assembly checking tool
#131
Anishka0107
closed
5 years ago
3
validator: Allow AF Info field to contain missing value.
#130
blankenberg
opened
6 years ago
2
Missing vcf-validator code from Dockerfile
#129
loreseeker
closed
6 years ago
2
Display type of report written
#128
srbcheema1
closed
6 years ago
0
Test cases for the NoMetaDefinitionError warning
#127
srbcheema1
opened
6 years ago
0
Improved message in summary report for sample fields
#126
srbcheema1
closed
6 years ago
1
Improve message in summary report for sample fields
#125
jmmut
closed
6 years ago
0
Added check to ignore symbolic alternate alleles
#124
ManeshNarayan
closed
6 years ago
12
Adding Clang 4.0 and 5.0
#123
ManeshNarayan
closed
6 years ago
2
EVA-1016 Flag symbolic SV alleles that are reported as duplicates as Warnings
#122
jmmut
closed
6 years ago
0
Tests for warnings in the body section
#121
srbcheema1
opened
6 years ago
1
Some report types are not supported
#120
hsiaoyi0504
closed
6 years ago
2
Added test cases for svlen
#119
srbcheema1
closed
6 years ago
1
headers with number of # charcaters other than 2
#118
andrewelamb
closed
4 years ago
6
Read compressed file
#117
srbcheema1
closed
6 years ago
18
Adds log to display filename
#116
srbcheema1
closed
6 years ago
7
Log what reports will be written
#115
jmmut
closed
6 years ago
0
EVA-1022 Different ploidies should be allowed for a given variant
#114
jmmut
closed
6 years ago
0
Adds gcc 7 to travis CI
#113
srbcheema1
closed
6 years ago
4
No error/warning for missing symbolic alternate allele description in header
#112
eroller
closed
6 years ago
2
display warning if the input VCF is compressed
#111
srbcheema1
closed
6 years ago
18
clang 3.8 and 3.9 added
#110
InderKaur
closed
6 years ago
6
adds newer version of gcc to the travis CI
#109
srbcheema1
closed
6 years ago
1
Metadata ID restriction more strict than VCF format for HLA contigs in GRCHh38 build with decoys
#108
JenniferShelton
closed
4 years ago
2
Read compressed files directly
#107
cyenyxe
closed
6 years ago
1
Add newer versions of GCC to the Travis CI build
#106
cyenyxe
closed
6 years ago
1
Add newer versions of Clang to Travis CI build
#105
cyenyxe
closed
6 years ago
0
Warn if the input VCF is compressed
#104
cyenyxe
closed
6 years ago
0
Fields PL and GL now depend on the ploidy of GT
#103
Anishka0107
closed
6 years ago
1
v0.6 not properly validating PL field in VCF 4.1
#102
garysaunders
closed
6 years ago
0
check ploidy when validating PL
#101
jaredo
closed
6 years ago
7
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