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EBIvariation
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vcf-validator
Validation suite for Variant Call Format (VCF) files, implemented using C++11
Apache License 2.0
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39
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vcf_validator.exe fails
#200
mrpk123
closed
4 years ago
5
EVA-1899 - Fix GT handling for CN variants + fix stoi handling in other places
#199
sundarvenkata-EBI
closed
4 years ago
1
EVA-1199 Validate genotypes and frequencies are present
#198
andresfsilva
closed
4 years ago
0
EVA-1637 vcf validator and asm checker can't uncompress bgzip files properly
#197
jmmut
closed
4 years ago
0
Example for building .fai?
#196
CholoTook
closed
4 years ago
6
Warnings and Errors could link to the relevant section of the specification
#195
CholoTook
closed
4 years ago
6
Latest release is experimental?
#194
CholoTook
closed
4 years ago
4
Sample #2 has 2 allele(s), but 1 were found in others (warning)
#193
jgbaum
closed
4 years ago
3
use trusty. xenial requires some non-trivial changes
#192
jmmut
closed
4 years ago
0
fix travis with ubuntu xenial
#191
jmmut
closed
4 years ago
0
Intermittent 'number of samples' error
#190
EvanTheB
closed
4 years ago
5
What does "Reference and alternate alleles do not share the first nucleotide" mean?
#189
EvanTheB
closed
3 years ago
6
Updating prerequisite and boost lib name
#188
iyangar
closed
5 years ago
0
Clean assembly_checker
#187
iyangar
closed
5 years ago
2
update validator_detail_v*.hpp
#186
jmmut
closed
5 years ago
0
EVA-1474 Validator fails on ubuntu 18.04 (only update README)
#185
jmmut
closed
4 years ago
0
Error with loadlocale: _nl_intern_locale_data
#184
dariober
closed
4 years ago
4
T2D-268 Add support for on-the-fly fasta indexing
#183
Zhicheng-Liu
closed
5 years ago
0
T2D-268 Report missing chromosome if fail to download from ENA
#182
Zhicheng-Liu
closed
5 years ago
1
T2D-268 Fix a segfault caused by out of bounds access.
#181
Zhicheng-Liu
closed
5 years ago
0
Provide working Docker image for users
#180
huguesfontenelle
closed
4 years ago
3
Check GP in interval [0,1] for v4.3 only.
#179
ssl9ek
opened
5 years ago
1
EVA-1421 Update travis configuration to Github Apps
#178
ebivariation-bot
closed
5 years ago
0
EVA-1406 Support custom IDs in the ALT column (and forbid custom SVTYPES)
#177
jmmut
closed
5 years ago
0
T2D-268 Add support for retrieving reference sequence from ENA
#176
Zhicheng-Liu
closed
5 years ago
1
EVA-1406 Support custom IDs in the ALT column
#175
jmmut
closed
5 years ago
0
Travis
#174
srbcheema1
closed
5 years ago
0
checks for compressed files
#173
srbcheema1
closed
4 years ago
1
Ensure compressed FASTA files are handled properly
#172
jmmut
closed
4 years ago
1
Add Assembly_report Library
#171
srbcheema1
closed
5 years ago
2
Add BND to valid SVTYPE values
#170
jmmut
closed
4 years ago
1
improve cmake with dynamic build to have more debug symbols
#169
jmmut
closed
4 years ago
3
EVA-1256 Report duplicate samples
#168
jmmut
closed
5 years ago
0
warn for unused parameters
#167
srbcheema1
closed
5 years ago
0
include db_name in error message
#166
srbcheema1
closed
5 years ago
0
Warn if there were unused parameters
#165
jmmut
closed
5 years ago
2
Code polishing and summing up the remaining tasks
#164
srbcheema1
closed
5 years ago
0
Option for `outdir` in assembly_checker
#163
srbcheema1
closed
5 years ago
0
Valid report
#162
srbcheema1
closed
5 years ago
0
Empty warning
#161
srbcheema1
closed
5 years ago
0
Compressed files are not properly read on Windows
#160
cyenyxe
closed
4 years ago
1
Text report
#159
srbcheema1
closed
5 years ago
1
Add CONTRIBUTING.md file
#158
srbcheema1
closed
5 years ago
0
Add CONTRIBUTING.md file
#157
srbcheema1
closed
5 years ago
2
demonstration of failure of vcf-validator on empty vcf file
#156
srbcheema1
closed
5 years ago
0
Resolved segmentation fault on an empty vcf file
#155
hritikgupta
closed
5 years ago
5
Segmentation fault on empty vcf file.
#154
srbcheema2
closed
5 years ago
4
add support to read vcf files from stdin
#153
srbcheema1
closed
5 years ago
0
Add locus (e.g. chr:start-end) to warning/error log along line number
#152
ambarrio
closed
4 years ago
1
Updates install scripts
#151
srbcheema1
closed
5 years ago
0
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