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EI-CoreBioinformatics
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bgrrl
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Use BB best practices in survey module
#33
cschu
opened
5 years ago
0
qualimap failure in latest qaa-container: issue with system fonts?
#32
cschu
closed
5 years ago
1
Cleanup 2019 04 05
#31
cschu
closed
5 years ago
0
Hotfix prokka fix
#30
cschu
closed
5 years ago
0
Dev
#29
cschu
closed
5 years ago
0
16S report appears to be missing in latest update (qaa-issue?)
#28
cschu
closed
5 years ago
1
Dev aamerge
#27
cschu
closed
5 years ago
0
Can packaging of analysis and assembly or analysis and annotation run in parallel?
#26
cschu
opened
5 years ago
0
asm_wrapper:velvet_module
#25
cschu
closed
5 years ago
2
Sanitize command line input
#24
cschu
opened
5 years ago
0
Error when config-dir is not present.
#23
cschu
closed
5 years ago
2
Check for dependencies prior to run
#22
cschu
opened
5 years ago
0
Check sspace for scaffolding/extension?
#21
cschu
opened
5 years ago
0
Path submitted do --ratt-reference-dir needs to be absolute
#20
cschu
opened
5 years ago
0
Add analysis packaging
#19
cschu
closed
5 years ago
0
Add read-packaging
#18
cschu
closed
5 years ago
0
Rewrite busco_wrapper
#17
cschu
closed
5 years ago
1
Rewrite/bolster prokka_wrapper
#16
cschu
closed
5 years ago
1
Rewrite asm_wrapper
#15
cschu
closed
5 years ago
1
bginit fails when called from conda environment
#14
cschu
closed
5 years ago
0
Call prokka_report automatically
#13
cschu
opened
6 years ago
0
Add project title (ENQ-XXXX) argument to bginit
#12
cschu
opened
6 years ago
0
Homogenize contig names for annotation postprocessing!
#11
cschu
opened
6 years ago
0
Check assembly size against expected genome size
#10
cschu
closed
6 years ago
0
Generate global assembly summary
#9
cschu
closed
6 years ago
1
Add unicycler --careful mode.
#8
cschu
closed
6 years ago
2
Add coverage of genome assemblies / sample.
#7
cschu
closed
6 years ago
0
Check assembly size against estimated/provided genome size
#6
cschu
opened
6 years ago
0
Add auto-xlsx-generation for reports
#5
cschu
opened
6 years ago
0
Add PacBio qa mode
#4
cschu
closed
6 years ago
2
Add ENTEROBASE mode
#3
cschu
closed
6 years ago
2
Allow qc-thresholds to be set as bgrrl-parameters.
#2
cschu
closed
6 years ago
1
Move blobtools analysis to independent pipeline, controlled by bgrrl.py
#1
cschu
closed
6 years ago
1