EI-CoreBioinformatics minos issues

EI-CoreBioinformatics / minos

The labyrinth king judges your gene models.

GNU Lesser General Public License v3.0

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BREAKING CHANGE: Feature/ncRNA_support

#62 gemygk closed 1 year ago
0
Fix: issue #60

#61 gemygk closed 1 year ago
0
seqkit translate errors if CDS files contains sequences below 3bp

#60 swarbred closed 1 year ago
1
Update singularity definitions

#59 dadrasarmin opened 2 years ago
1
Need help to improve Minos final model based on busco results and oddities

#58 dadrasarmin closed 2 years ago
2
A suggestion for improving installation commands in the readme file

#57 dadrasarmin opened 2 years ago
0
protein evidence (blast or diamond) - minos_metrics_blastp_tophit fails

#56 dadrasarmin opened 2 years ago
0
Singularity def files not working on remote builder or vm on mac + suggestion

#55 dadrasarmin closed 2 years ago
3
Recalculate metrics on the final models

#54 gemygk opened 3 years ago
0
Fix Issue #52

#53 gemygk closed 3 years ago
0
Silent BUSCO count error with certain datasets

#52 gemygk closed 3 years ago
0
Resolved Issue37 #37

#51 gemygk closed 3 years ago
0
[Enhancement] Use /dev/shm for speeding up Mikado (through the --shm CLI switch)

#50 lucventurini closed 3 years ago
7
Fix Issue48

#49 gemygk closed 3 years ago
0
NameError: name 'BUSCO_TABLE' is not defined

#48 gemygk closed 3 years ago
1
Fix issue with collapse_metrics #45

#47 gemygk closed 3 years ago
2
Corrected min_intron_length to exclude mono exonic counts #35

#46 gemygk closed 3 years ago
0
error with collapse_metrics

#45 swarbred closed 3 years ago
10
Fixed issue with snakemake reserved keyword 'copy' #43

#44 gemygk closed 3 years ago
0
snakemake: copy is reserved for internal use

#43 gemygk closed 3 years ago
2
Update BUSCO to v5

#42 cschu opened 3 years ago
3
No more madness

#41 lucventurini closed 3 years ago
4
Issue 36 cpc2 download

#40 lucventurini closed 3 years ago
0
Moving to GH actions

#39 lucventurini closed 3 years ago
0
Move to GitHub actions

#38 lucventurini closed 3 years ago
5
Check requirement for kallisto

#37 swarbred closed 3 years ago
1
CPC2 download is erratic

#36 lucventurini closed 3 years ago
9
correction to metrics_oddities.tsv

#35 swarbred closed 3 years ago
4
Error minos-1.6.2 minos configure

#34 swarbred closed 3 years ago
3
busco + blast+ 2.10.1

#33 cschu opened 4 years ago
1
Issue18 0.8.1 convert repeats

#32 cschu closed 4 years ago
0
CPC2 alternative?

#31 cschu opened 4 years ago
9
Issue 12

#30 gemygk closed 4 years ago
0
Build/travis

#29 cschu closed 4 years ago
0
Generate a metric oddities file based on the mikado mikado.loci.metrics.tsv, mikado.subloci.metrics.tsv and mikado.monoloci.metrics.tsv

#28 swarbred opened 4 years ago
11
Provide summary of collapsed *.metrics file

#27 swarbred closed 2 years ago
2
Update configuration around external_metrics.txt

#26 swarbred opened 4 years ago
10
memory (and potentially cores) not read from hpc_config

#25 swarbred closed 4 years ago
4
Add GTF support for input transcript runs

#24 cschu closed 2 years ago
3
Renaming GMC?

#23 cschu closed 4 years ago
20
gmc 1.0 fails when --hpc_config is not supplied

#22 cschu closed 4 years ago
0
merging protein blasts may overwhelm cat

#21 cschu closed 4 years ago
0
Make BUSCO rules portable

#20 cschu opened 4 years ago
0
Deal with BUSCO "race" condition

#19 cschu closed 4 years ago
0
Use of repeats in classification

#18 swarbred closed 1 year ago
31
Add BUSCO rules

#17 swarbred closed 4 years ago
67
error expression metrics

#16 swarbred closed 4 years ago
2
Change to mikado pick log-level

#15 swarbred closed 4 years ago
1
Additional release.gff3 stats

#14 swarbred closed 4 years ago
21
User editable classification related parameters

#13 swarbred closed 1 year ago
18