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pdb2pqr
PDB2PQR - determining titration states, adding missing atoms, and assigning charges/radii to biomolecules.
http://www.poissonboltzmann.org/
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PDB2PQR
This package contains the PDB2PQR software. For more information, please see
Home page:
http://www.poissonboltzmann.org/
Documentation:
http://pdb2pqr.readthedocs.io