Ensembl Bio-DB-HTS issues

Ensembl / Bio-DB-HTS

Git repo for Bio::DB::HTS module on CPAN, providing Perl links into HTSlib

Apache License 2.0

24 stars 16 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

Copyright optimisation

#109 sgiorgetti opened 13 hours ago
0
TravisCI optimisations

#108 sgiorgetti closed 17 hours ago
0
New release?

#106 serge2016 opened 1 year ago
0
Not able to compile/install Bio::DB::HTS in conda environment

#105 zuber-bioinfo opened 1 year ago
1
Packaging: MANIFEST, META.* files can be generated

#104 zmughal closed 1 year ago
2
unaligned reads?

#102 rhysf opened 2 years ago
0
Interest in bringing back Alien-HTSlib

#101 zmughal opened 2 years ago
4
master branch has become main

#100 sgiorgetti closed 2 years ago
0
Remove perl 5.10 testing in travis

#98 TamaraNaboulsi closed 3 years ago
0
Decreasing Module::Build minimum dependency to 0.38

#97 TamaraNaboulsi closed 3 years ago
1
Reduce Module::Build dependency in 2.x branch

#96 ntm closed 2 years ago
2
Yearly copyright update

#95 nwillhoft closed 3 years ago
0
Tests fail with htslib 1.11

#94 keiranmraine closed 3 years ago
2
Delete DISCLAIMER

#93 mkszuba closed 4 years ago
2
htslib 1.10 compatibility (released Dec2019)

#92 keiranmraine closed 3 years ago
1
Log Wording Ambiguous

#91 DarioS closed 1 day ago
3
Yearly copyright update

#90 tgrego closed 4 years ago
0
Request to honour POSIX ACLs

#89 CanWood closed 1 day ago
3
copyright update

#88 tgrego closed 5 years ago
0
Documentation fixes

#87 jmarshall closed 5 years ago
0
Install fails with "cannot remove path when cwd is /tmp/SokefcfsUv/Bio-DB-HTS"

#86 MurphyDavid closed 5 years ago
6
INSTALL.pl from cloned repository failing on Ubuntu/perl5.22.1

#85 pmcarlton closed 5 years ago
3
Ignore .gzi index files and clean test output files

#84 jmarshall closed 5 years ago
1
Reuse bcf_get_info/_format API buffers

#83 jmarshall closed 5 years ago
7
Problems when installing Bio::DB::HTS, possibly due to memory leak

#82 AndreVidas closed 5 years ago
10
INSTALL.pl assumes sudo is installed but fails to install anything

#81 eburgueno closed 5 years ago
1
Issues running in ubuntu

#80 juancresc closed 5 years ago
2
lzma.h file missing on Mac OSx High Sierra v.10.13.6

#79 SabriJamal opened 5 years ago
1
Reduce Module::Build version dependency

#78 jmarshall closed 6 years ago
2
Trouble installing under Ubuntu and Windows

#77 prishly closed 5 years ago
4
Bus error/segfault on freebsd

#76 avullo closed 5 years ago
0
Illegal versioning scheme

#75 mkszuba closed 5 years ago
1
Build.PL: Improve pkgconfig integration

#74 mkszuba closed 5 years ago
2
Build.PL: allow explicit definition of hts_include and hts_lib

#73 mkszuba closed 5 years ago
0
Bio__DB__HTS__VCFfile now defined twice

#72 jgrigonis closed 6 years ago
1
Fix minor issue in POD

#71 robaganrab closed 6 years ago
1
VCF/BCF returning the raw header

#70 avullo closed 6 years ago
1
Minor build improvements and warning fixes

#69 jmarshall closed 6 years ago
5
Refcount-based fix for index memory releasing problem

#68 jmarshall closed 6 years ago
5
Multiple, conflicting, index memory release attempts may lead to segfault

#67 avullo closed 6 years ago
14
Add memory leak cases to test suite

#66 avullo closed 6 years ago
6
Ensure header single point of access via PP API

#65 avullo opened 6 years ago
0
Implement -filter for features(-type=>'coverage')

#64 jmarshall closed 6 years ago
6
Travis to test with multiple htslib versions

#63 avullo closed 6 years ago
1
htslib 1.3.1 (and older) non-compatible header_read for SAM

#62 avullo closed 6 years ago
5
Improve tests

#61 keiranmraine closed 6 years ago
0
HTSfile::reindex with CRAM: renaming after sorting expects BAM

#60 avullo closed 6 years ago
1