issues
search
FRED-2
/
OptiType
Precision HLA typing from next-generation sequencing data
BSD 3-Clause "New" or "Revised" License
180
stars
74
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Downloading MNIST dataset
#98
prachikashikar
closed
4 years ago
0
Running OptiType for non human samples
#97
drtamermansour
closed
2 months ago
6
Does OptiType care about read groups?
#96
Stikus
closed
5 years ago
9
How to output the result with 8 digits ?
#95
lidd77
closed
4 years ago
1
Whether Optitype supports the target sequencing data ?
#94
lidd77
opened
5 years ago
0
OptiType mapping memory issues
#93
geejaytee
opened
5 years ago
1
Question about RazerS3 and "don't use the read mapper's paired-end capabilities".
#92
NVSmirnova
closed
4 years ago
1
Question about RazerS3 and don't use the read mapper's paired-end capabilities.
#91
NVSmirnova
closed
5 years ago
0
Individual random samples failing
#90
egnst
closed
5 years ago
4
What is the Objective value in the output
#89
Rashesh7
closed
4 years ago
1
hdf update
#88
andras86
closed
5 years ago
0
if not razers3, any recommendable software for DNA and RNA reference
#87
worker000000
opened
5 years ago
0
No alleles called because of possible alignment issue
#86
toddcreasy
opened
5 years ago
5
OptiType result output
#85
ShahiRB
closed
4 years ago
6
OSError: [Errno 13] Permission denied: 'tmp' #wifiphisher #roguehostpad
#84
ISBaloch
opened
5 years ago
0
Optitype crashed when using BAM from other aligner
#83
MartinPersida
opened
5 years ago
2
Config parser error, no section 'behavior'
#82
briankarlberg
closed
6 years ago
2
Confusion about the optional zero step
#81
ysbioinfo
closed
6 years ago
2
hi everyone, did any of you overcome thay type of issue ?
#80
AmyNjaaye
opened
6 years ago
1
hla translation
#79
ktroule
opened
6 years ago
6
Optitype on different sequencing
#78
ktroule
closed
6 years ago
1
Keeping bam
#77
ktroule
closed
6 years ago
8
Using Optitype on Mouse Data
#76
jplaverdure
closed
6 years ago
2
Conda release
#75
smangul1
opened
6 years ago
1
Added new option to set specific string as prefix instead of datestamp
#74
dpaulino
closed
6 years ago
2
Optitype mapping error?
#73
ghost
closed
6 years ago
3
Starting with bam files
#72
ghost
closed
6 years ago
2
OSError: [Errno 13] Permission denied: '/local'
#71
ktroule
opened
6 years ago
19
weird HLA results
#70
kylec
opened
6 years ago
3
permission error occured when using docker file
#69
zd200572
closed
6 years ago
2
Fix/hdf5 link
#68
b-schubert
closed
6 years ago
0
Segmentation fault (core dumped)
#67
JunhuiLi1017
closed
1 year ago
2
E::hts_open_format] Failed to open file out/2017_11_18_07_05_37/2017_11_18_07_05_37_1.bam
#66
dhwani2410
closed
6 years ago
1
Docker container is not building
#65
mwalzer
opened
6 years ago
6
KeyError when using BAM files
#64
amoesch
closed
6 years ago
0
KeyError - '%s not in index' % objarr[mask] (pandas)
#63
eladc
closed
6 years ago
3
Allele Database is Old
#62
DarioS
opened
7 years ago
1
Fix/versioning
#61
b-schubert
closed
6 years ago
0
Error pyomo
#60
ktroule
opened
7 years ago
9
Mess with the version
#59
serge2016
closed
7 years ago
1
Error loading 'pyutilib.component' entry points: 'type object 'PluginGlobals' has no attribute 'push_env
#58
eli241
closed
7 years ago
6
[INTERNAL] cbc travis test
#57
b-schubert
closed
7 years ago
0
[External] GLPK error 4.5x
#56
b-schubert
closed
7 years ago
1
Unable to get docker container to work
#55
mhalagan
closed
7 years ago
3
[INTERNAL] Docker base image update
#54
b-schubert
closed
7 years ago
0
Docker image reproducible and making biodocker the user is restrictive
#53
mhalagan
closed
7 years ago
1
Error at determining minimal set of non-overshadowed alleles
#52
JaneMerlevede
closed
7 years ago
8
Classes II ?
#51
zimoun
opened
7 years ago
13
OptiType throwing error: Invalid constraint expression
#50
alexanderwhatley
opened
7 years ago
7
Optitype not predicting HLA-C alleles
#49
alexanderwhatley
closed
7 years ago
4
Previous
Next