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FelixKrueger
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TrimGalore
A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS data
GNU General Public License v3.0
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Problem with cutadapt line1
#44
ChristophKramer
closed
5 years ago
2
Add option `--basename` to determine name of output files
#43
FelixKrueger
closed
5 years ago
1
Die if paired-end files are identical
#42
FelixKrueger
closed
5 years ago
1
cutadapt nextseq-trim option
#41
FrancisBlokzijl
closed
5 years ago
6
adapter regular expression
#40
wangjiawen2013
closed
5 years ago
4
Multi-Core support
#39
fjames003
closed
5 years ago
10
Problem running paired mode with 2 input files
#38
Rhinogradentia
closed
5 years ago
4
Stop trimgalore from searching for adaptor
#37
djbradshaw2
closed
5 years ago
5
Can you explain the difference between _val_1/_val_2 and _trimmed?
#36
andrewejaffe
closed
5 years ago
2
error with sequence description matching
#35
bobkallal
closed
6 years ago
3
Add the cutadapt --cores option to trim_galore
#34
sonderkar
closed
6 years ago
1
Accept degenerate sequences
#33
tiagobrc
closed
5 years ago
3
Default vs Specified Adapter
#32
ionox0
closed
5 years ago
3
Update User Guide to include hard-trimming and Epigenetic Clock Pre-Processing
#31
FelixKrueger
closed
6 years ago
1
Add option to hard-trim reads to a certain read length without any adapter/quality trimming
#30
FelixKrueger
closed
6 years ago
4
Consider adding option for custom Epigenetic Clock processing
#29
FelixKrueger
closed
6 years ago
2
Release v0.4.5 report itself as v0.4.4_dev
#28
greatfireball
closed
6 years ago
1
Allow max_n to equal zero
#27
dshivak
closed
6 years ago
1
TrimGalore Multicore Workaround
#26
kkapuria3
closed
6 years ago
2
Citing TrimGalore
#25
minor7b5
closed
6 years ago
4
option --length might not working got v0.4.5_dev
#24
lufuhao
closed
6 years ago
1
Testing best practices
#23
ionox0
closed
6 years ago
5
colourspace test should fail
#22
ewels
closed
6 years ago
1
Fix bioconda link in readme
#21
ewels
closed
6 years ago
0
Broken bioconda link
#20
ODiogoSilva
closed
6 years ago
1
Trim Galore -a "A{10}"
#19
xie186
closed
6 years ago
3
cutadapt switched to multicore
#18
lorbaer
closed
6 years ago
2
Output file name after trimming
#17
divy-kangeyan
closed
6 years ago
7
Multithreaded support from Cutadapt in trim_galore
#16
ajphipps
closed
6 years ago
18
TrimGalore says adapters are removed, but FastQC says there were never any to begin with
#15
hhg7
closed
6 years ago
11
Whenever I run Trim Galore I get cut adapt error "Too many parameters"
#14
sxrastogi
closed
6 years ago
7
passing arguments to cutadapt
#13
samuelCollombet
closed
6 years ago
2
Suggest updating to allow multiple treads in cutadapt (if not already?)
#12
AMChalkie
closed
6 years ago
1
Added badges to readme
#11
ewels
closed
7 years ago
1
Added a travis testing config
#10
ewels
closed
7 years ago
0
Tidying up documentation
#9
ewels
closed
7 years ago
1
--rbss Trim Galore version: 0.4.3 not removing two extra basepairs
#8
bri2020
closed
7 years ago
3
question about --rrbs of v0.4.3
#7
hxlei
closed
7 years ago
1
--illumina default adapter trimming
#6
pvphaneuf
closed
7 years ago
1
Gunzip issue
#5
achamess
closed
7 years ago
10
Update RRBS Guide
#4
FelixKrueger
closed
7 years ago
0
Change the --rrbs option for paired-end reads
#3
FelixKrueger
closed
7 years ago
0
FastQC args error with GNU parallel
#2
biobenkj
closed
7 years ago
3
Problems or maybe bugs?
#1
YZhouEntheos
closed
7 years ago
2
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