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FertigLab
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CoGAPS
Bayesian MCMC matrix factorization algorithm
https://www.bioconductor.org/packages/release/bioc/html/CoGAPS.html
BSD 3-Clause "New" or "Revised" License
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result interpretation
#66
dm8000
closed
3 months ago
1
CoGAPS on proteomic data
#65
dm8000
closed
1 year ago
2
nPattern value selection
#64
davemcg
closed
1 year ago
2
so i can merge
#63
jeanettejohnson
closed
2 years ago
0
add functions to generate GSEA + related plots
#62
jeanettejohnson
closed
2 years ago
0
RunCoGAPS on Seurat object
#61
YuliaInn
closed
2 years ago
2
fix thresholding
#60
jeanettejohnson
closed
2 years ago
0
Plot result by group
#59
jeanettejohnson
closed
2 years ago
0
One import statement to allow cogaps module inside pycogaps to compile with the setup.py script
#58
jeanettejohnson
closed
3 years ago
0
plotPatternMarkers function fix
#57
jeanettejohnson
closed
2 years ago
0
Genome-wide vs. single-cell
#56
TJonCooper
opened
3 years ago
3
Set patterns manually (e.g cell type)
#55
shambam
opened
3 years ago
4
RNASeq Data Preprocessing for CoGAPS
#54
mdmanurung
closed
1 year ago
1
Develop
#53
melanieloth
closed
3 years ago
1
less pattern numbers than 'nPatterns'
#52
qingnanl
closed
3 years ago
2
Current CoGAPS version?
#51
acspiegel
opened
4 years ago
1
Removed packageDescription from citation file
#50
melanieloth
closed
4 years ago
0
CoGAPS checkpoints not enabled
#49
badoi
opened
4 years ago
5
Exported methods getAmplitudeMatrix and getPatternMatrix
#48
archana64
closed
3 months ago
1
Exported methods getAmplitudeMatrix and getPatternMatrix
#47
archana64
closed
3 months ago
1
how to select pattern after scCoGAPS
#46
elfore
opened
4 years ago
0
Develop
#45
archana64
closed
4 years ago
0
Added travis cache for mac
#44
archana64
closed
4 years ago
0
Fix citation travis
#43
archana64
closed
4 years ago
0
Check Travis build
#42
archana64
closed
4 years ago
0
Removed packageDesciption() function from citation file
#41
archana64
closed
4 years ago
0
Export getAmplitudeMatrix and getPatternMatrix methods
#40
archana64
closed
4 years ago
0
Developer archana
#39
archana64
closed
4 years ago
0
Developer archana
#38
archana64
closed
4 years ago
0
Cut thresholding for PatternMarkers is not working as intended
#37
rossinerbe
closed
4 years ago
0
Amatrix rownames repeated
#36
fshiau
opened
4 years ago
0
Linking to Rhdf5lib
#35
grimbough
closed
3 months ago
1
Remove singleCell parameter and always calculate sparse mean
#34
sherman5
closed
4 years ago
0
Rename "genes" to "measurements" or some other alternative
#33
sherman5
opened
4 years ago
0
Re-Write Vignettes
#32
sherman5
closed
12 months ago
1
Handle duplicates when sub-setting indices in distributed CoGAPS
#31
sherman5
opened
4 years ago
0
Make sure explicit SIMD instructions don't break on non-Intel processors
#30
sherman5
opened
4 years ago
1
HDF5 File Support
#29
sherman5
opened
4 years ago
0
running time cogaps
#28
giovp
closed
5 years ago
6
defined nP
#27
genesofeve
closed
6 years ago
2
R interface
#26
hlimb1
closed
6 years ago
1
Matrix write to file
#25
tigerygao
closed
6 years ago
1
made uncertainty matrix S optional
#24
hlimb1
closed
6 years ago
2
Sce input
#23
hlimb1
closed
6 years ago
3
General mat constructor
#22
tigerygao
closed
6 years ago
0
Configure script
#21
sherman5
closed
6 years ago
0
Configure script
#20
sherman5
closed
6 years ago
0
Add index sampler
#19
tigerygao
closed
6 years ago
4
Main vignette
#18
hlimb1
closed
6 years ago
3
Contruct partial matrix
#17
tigerygao
closed
6 years ago
3
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