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ForwardSimulation
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forrustts
Forward time simulation, rust, and tree sequences.
https://docs.rs/forrustts
MIT License
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Use Into-Option trick for tables API
#159
molpopgen
closed
3 years ago
0
remove pub visibility of Segment
#158
molpopgen
closed
3 years ago
0
Change MutationRecord key to Option<usize>
#157
molpopgen
closed
3 years ago
0
Make EdgeBuffer a newtype
#156
molpopgen
closed
3 years ago
0
reduce simulation code duplication
#155
molpopgen
closed
3 years ago
0
Add MutationRecord::time
#153
molpopgen
closed
3 years ago
0
Fix mutation table sorting. Add more table validation.
#152
molpopgen
closed
3 years ago
0
move stochastic tests to tests/
#151
molpopgen
closed
3 years ago
0
Add newtypes
#150
molpopgen
closed
3 years ago
0
Fix clippy warnings
#149
molpopgen
closed
3 years ago
0
Add low-level newtypes
#148
molpopgen
closed
3 years ago
1
Example program behavior
#147
molpopgen
closed
3 years ago
1
Consistent use of IdType
#146
molpopgen
closed
3 years ago
1
change Time from i64 to f64
#145
molpopgen
closed
3 years ago
0
Time should be f64
#144
molpopgen
closed
3 years ago
1
Nested list access performance
#143
molpopgen
closed
3 years ago
2
Add insert/remove functions to NestedForwardList
#142
molpopgen
closed
3 years ago
0
Deprecate nested_forward_list::null() and replace with constant.
#141
molpopgen
closed
3 years ago
0
NestedForwardList::null should not be a class function.
#140
molpopgen
closed
3 years ago
0
Keep input roots during simplification
#139
molpopgen
closed
3 years ago
2
Modularize mutation simplification.
#138
molpopgen
closed
3 years ago
0
Bump to tskit-rust 0.3.0
#137
molpopgen
closed
3 years ago
0
Tskit output
#136
molpopgen
closed
3 years ago
3
Idiomatic iteration over values in NestedForwardList
#135
molpopgen
closed
3 years ago
0
change back to GPL3+
#134
molpopgen
closed
3 years ago
0
Tables mod should be pub.
#133
molpopgen
closed
3 years ago
3
Decide on license
#132
molpopgen
closed
3 years ago
0
Iterator for nested forward list.
#131
molpopgen
closed
3 years ago
2
Show how to modify node flags. Closes #119
#130
molpopgen
closed
3 years ago
0
Add getters for table slices. Closes #104.
#129
molpopgen
closed
3 years ago
0
Streamline example simulation program.
#128
molpopgen
closed
3 years ago
0
Record indexes of extinct mutations in simplify_mutations.
#127
molpopgen
closed
3 years ago
0
Consider "retain input roots" flag for simplification
#126
molpopgen
closed
1 year ago
2
MutationRecord::site is now IdType. Closes #121
#125
molpopgen
closed
3 years ago
0
Add type name for NestedForwardList index. Closes #114
#124
molpopgen
closed
3 years ago
0
Add [ignore] to long-running tests
#123
molpopgen
closed
3 years ago
0
Refactor integration tests
#122
molpopgen
closed
3 years ago
0
MutationRecord::site should be IdType and not usize?
#121
molpopgen
closed
3 years ago
0
Fix behavior of table setter/getter with respect to table index status.
#120
molpopgen
closed
3 years ago
0
TableCollection needs a function to allow node flag modification.
#119
molpopgen
closed
3 years ago
0
Examples vs integration tests
#118
molpopgen
closed
3 years ago
0
Edge/node table setter and "is_indexed"
#117
molpopgen
closed
3 years ago
0
Simplification output changes
#116
molpopgen
closed
3 years ago
1
Expand the trees API
#115
molpopgen
closed
3 years ago
0
NestedForwardList should have an IndexType defined
#114
molpopgen
closed
3 years ago
0
Add initial trees api
#113
molpopgen
closed
3 years ago
0
Rename NULL_ID
#112
molpopgen
closed
3 years ago
1
Table validation
#111
molpopgen
closed
3 years ago
0
Table sorting: allow retention of sites w/o mutations.
#110
molpopgen
closed
1 year ago
1
Add dump/set table functions to TableCollection.
#109
molpopgen
closed
3 years ago
0
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