GMOD Apollo3Server issues

GMOD / Apollo3Server

Apollo 3 Server: Grails 4 + Neo4j 3.5 + JB2

BSD 3-Clause "New" or "Revised" License

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integrate swagger into master / neo4j brnach

#91 nathandunn opened 3 years ago
0
fixes https://github.com/GMOD/apollo-gmod-js/issues/45

#90 nathandunn opened 3 years ago
2
Fix io service controller

#89 nathandunn closed 3 years ago
0
Fix exon service

#88 nathandunn closed 3 years ago
1
move swagger to use spring fox or custom grails implementations

#86 nathandunn closed 3 years ago
0
change swagger library to use spring fox (or something more robust)

#85 nathandunn opened 3 years ago
0
Clean move mapper

#84 nathandunn closed 3 years ago
0
fixes the initial query

#83 nathandunn closed 3 years ago
0
can I return `uniqueName` from server and match in client?

#82 nathandunn closed 3 years ago
0
trying to reconcile with fix for 33

#81 nathandunn closed 3 years ago
2
move from `uniquename` to `uniqueName`

#80 nathandunn closed 3 years ago
1
update client-side model to always return parent even if not part of display

#79 nathandunn opened 3 years ago
0
allow deletion / obsoletion of a gene

#77 nathandunn opened 3 years ago
0
filter / identify in OGS evidence and refined annotations where we have stop codons within gene

#76 nathandunn opened 3 years ago
0
find missing start and stop codons within both published and refined annotations

#75 nathandunn opened 3 years ago
2
use synteny to view orthologous regions using filterable BLAST hits in order to migrate and review annotations across organisms

#73 nathandunn opened 3 years ago
4
transfer annotations across species based on functional annotation hits

#72 nathandunn closed 3 years ago
2
initial adding, hot-reloading added

#71 nathandunn closed 3 years ago
4
client API calls should not generate a session

#70 nathandunn opened 3 years ago
0
fix post / put / delete operations within the swagger-verse

#69 nathandunn opened 4 years ago
0
remove username / password /clientToken from everywhere

#68 nathandunn opened 4 years ago
0
added steam cleaner plugin to expose the REST API

#67 nathandunn closed 4 years ago
3
add and integrate with Spring / Grails security for the client / server

#66 nathandunn opened 4 years ago
1
add swagger and align to current methods

#65 nathandunn closed 4 years ago
0
create a JB2 plugin that uses services

#64 nathandunn closed 3 years ago
0
Fix 10 integration tests v1

#63 nathandunn closed 4 years ago
0
fix multi_exon yeast test in python-apollo

#61 nathandunn opened 4 years ago
0
fix or skip dual exon load using listDistinct

#60 nathandunn closed 4 years ago
0
saving, though it looks like garbage

#59 nathandunn closed 4 years ago
0
createCDS (assign to sequence) and setCDS (assign to transcript and location) should be the same method

#58 nathandunn opened 4 years ago
0
refactor FeatureService, create MRNA service

#57 nathandunn opened 4 years ago
0
handle duplicate organism public commonNames

#56 nathandunn opened 4 years ago
0
make sure we can complete a fly load

#55 nathandunn opened 4 years ago
0
make sure we can complete a yeast load

#54 nathandunn opened 4 years ago
0
fixedes dual exon yeast test

#53 nathandunn closed 4 years ago
0
fix yeast additions, with dual exons

#52 nathandunn closed 4 years ago
2
loading yeast data in apollo-performance fails to load mRNAs

#51 nathandunn closed 4 years ago
4
add JDK 11 support - including travis

#50 nathandunn closed 4 years ago
1
fix travis output

#49 nathandunn closed 4 years ago
1
fix annotations.test_isoforms, should only create a single gene

#48 nathandunn closed 4 years ago
1
Fix cds

#47 nathandunn closed 4 years ago
0
modify instanceof to instanceOf

#46 nathandunn closed 4 years ago
1
remove instanceof in favor of "<instance>.instanceOf()

#45 nathandunn closed 4 years ago
1
Test ubuntu 20.04 java 11+

#44 alpapan closed 8 months ago
2
fix isoform annotation test

#43 nathandunn closed 4 years ago
7
make sure that single-level annotation tests work

#41 nathandunn closed 4 years ago
0
allow admin/instructors additional status values

#42 obsidian83 opened 4 years ago
3
fix FASTA output in IO_tests that were skipped

#39 nathandunn opened 4 years ago
0
fix VCF output

#38 nathandunn opened 4 years ago
0
fix gff3 output test

#37 nathandunn closed 4 years ago
5