GenABEL-Project ProbABEL issues

GenABEL-Project / ProbABEL

Tool for genome-wide association analysis of imputed genetic data.

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issues

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CI: run on PRs, add ./configure options to build; remove .travis.yml

#52 lckarssen closed 1 month ago
0
Minor updates to the README and .gitignore list.

#51 lckarssen closed 1 month ago
0
CICD: Add "make check" to build job

#50 lckarssen closed 1 month ago
0
CICD fix: use sudo for Ubuntu package installation

#49 lckarssen closed 7 months ago
0
CI/CD: add build job

#48 lckarssen closed 7 months ago
0
probabel 0.5.0 fails two checks

#47 tillea opened 3 years ago
1
Conditionally palinear returns results for

#46 mightyphil2000 opened 4 years ago
1
Failure of test suite for big endian architectures

#45 tillea closed 7 years ago
5
Problem with reading gzipped dosage files

#44 Sodbo opened 7 years ago
4
Add `autoreconf -i` step to doc/INSTALL

#43 Sodbo closed 7 years ago
2
Update manual/ChangeLog with info on gzipped files

#42 lckarssen closed 7 years ago
0
Improvements that allow reading from gzipped files

#41 lckarssen closed 7 years ago
0
Improvements that allow reading from gzipped files

#40 lckarssen closed 7 years ago
1
Using vectors and strings instead of arrays (some with hard coded size)

#39 lckarssen closed 7 years ago
0
Several small improvements

#38 lckarssen closed 7 years ago
0
make check fails at test_bt.sh and eigen 3.3.1

#37 maarten-k opened 7 years ago
6
Fix a memory leak in pacoxph

#36 lckarssen closed 7 years ago
0
Force the use of the C++11 standard with compiler flags

#35 lckarssen closed 7 years ago
0
Fix memory leak (issue #31)

#34 lckarssen closed 7 years ago
2
Fix compiler errors about static const double on GCC 6.2.0

#33 lckarssen closed 7 years ago
0
Compiling fails with GCC 6.2.0

#32 lckarssen closed 7 years ago
3
10× increase in RAM usage between v0.4.4 and v0.5.0 when using --mmscore with palinear

#31 lckarssen closed 7 years ago
3
Add more information on the --nids option to the documentation

#30 lckarssen opened 8 years ago
0
Allow VCF format for input of genotype data

#29 amanicha opened 8 years ago
1
Minor fixes for Jenkins cppcheck and cpplint warnings and removed some unused code.

#28 lckarssen closed 8 years ago
0
The R checks for CoxPH fail with survival package 2.39.2

#27 lckarssen opened 8 years ago
2
Fix issue #15

#26 lckarssen closed 8 years ago
0
Fix Issue #15: interactions in Cox broken

#25 lckarssen closed 8 years ago
1
Add option to fllip reference and effect allele based on MAF

#24 lckarssen closed 8 years ago
0
Fix Issue #21: Remove "interaction_only" option

#23 lckarssen closed 8 years ago
2
A few minor Doxygen fixes

#22 lckarssen closed 8 years ago
0
Remove "interaction_only" option

#21 wuttke closed 8 years ago
1
Add option to compress output files

#20 lckarssen opened 8 years ago
0
Updated Doxygen documentation of the mlinfo class

#19 lckarssen closed 8 years ago
0
Fix minor typo in code comment

#18 lckarssen closed 8 years ago
0
V0.4.5 hotfix

#17 lckarssen closed 8 years ago
0
Too many NANs for SNPs with low `Rsq` when some commandline options are specified

#16 lckarssen closed 8 years ago
1
Coxph interactions not working

#15 lckarssen closed 8 years ago
2
read gz compressed text-based genotype

#14 maarten-k closed 8 years ago
2
reading gz'ed genotypes

#13 maarten-k closed 8 years ago
3
Allow reading of gzipped files

#12 lckarssen closed 7 years ago
2
The R checks for linear regression fail when using Eigen > 3.2.1

#11 lckarssen opened 9 years ago
5
Robust covariances for Cox in ProbABEL

#10 lckarssen opened 9 years ago
1
Covariances between betas for all options in ProbABEL

#9 lckarssen opened 9 years ago
0
Add p-values to the ProbABEL output

#8 lckarssen opened 9 years ago
1
Add an option to ProbABEL that removes SNPs with nan betas from the output

#7 lckarssen opened 9 years ago
0
Add option to ProbABEL to list logliks in output

#6 lckarssen opened 9 years ago
0
Specificy reference allele in ProbABEL modelling

#5 lckarssen closed 8 years ago
2
Add function to PA to re-order phenotype data if necessary

#4 lckarssen opened 9 years ago
0
Add Plink-like log file to ProbABEL

#3 lckarssen opened 9 years ago
0