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GenomicMedLab
/
cool-seq-tool
https://coolseqtool.readthedocs.io
MIT License
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cicd: add priority label check
#279
jsstevenson
closed
8 months ago
0
build: update build metadata
#278
jsstevenson
closed
8 months ago
0
cicd: test in python 3.12
#277
jsstevenson
closed
8 months ago
0
chore: update license
#276
jsstevenson
closed
8 months ago
0
docs: add badges
#275
jsstevenson
closed
8 months ago
0
fix: scope of resp if breakpoint does not occur on an exon
#274
jarbesfeld
closed
9 months ago
2
Fix resp scope for get_nearest_transcript_junction
#273
jarbesfeld
closed
9 months ago
0
build: pin ruff to v0.2.0
#272
korikuzma
closed
9 months ago
0
Pin ruff==0.2.0
#271
korikuzma
closed
9 months ago
0
Update SeqRepo collection to `2024-02-20`
#270
korikuzma
closed
5 months ago
0
Resolve S608 errors
#269
korikuzma
opened
9 months ago
2
feat: Determine adjacent exon for fusions with non-exonic breakpoint
#268
jarbesfeld
closed
9 months ago
0
polars DeprecationWarning: named `columns` param is deprecated
#267
korikuzma
closed
5 months ago
0
Return exon that is adjacent to a genomic breakpoint
#266
jarbesfeld
closed
9 months ago
3
fix: package version
#265
korikuzma
closed
10 months ago
0
build: replace pyliftover with agct to improve performance
#264
korikuzma
closed
10 months ago
0
Replace pyliftover with agct
#263
korikuzma
closed
10 months ago
0
docs: fix readme links to docs
#262
jsstevenson
closed
10 months ago
0
Fix `test_get_prioritized_transcripts_from_gene` in `test_mane_transcript.py`
#261
jsstevenson
closed
4 months ago
2
style: add additional ruff checks
#260
jsstevenson
closed
10 months ago
0
docs: add generated changelog
#259
jsstevenson
closed
10 months ago
0
fix: StrEnum to Enum for python < 3.11
#258
korikuzma
closed
10 months ago
0
fix: include package data
#257
korikuzma
closed
10 months ago
4
Add package data
#256
korikuzma
closed
10 months ago
0
Reduce the number of tests
#255
korikuzma
opened
10 months ago
1
merge changes from staging
#254
korikuzma
closed
10 months ago
0
`event_loop` fixture deprecated
#253
jsstevenson
closed
5 months ago
4
refactor!: initial work for cleaning up `ExonGenomicCoordsMapper`
#252
korikuzma
closed
11 months ago
0
chore: remove todo's in tests
#251
korikuzma
closed
10 months ago
0
chore: remove unused classes/methods/variables
#250
korikuzma
closed
10 months ago
1
refactor!: fix class naming
#249
korikuzma
closed
11 months ago
0
Add badges, etc
#248
jsstevenson
closed
8 months ago
1
tests: resolve warnings
#247
korikuzma
closed
11 months ago
0
Remove unused methods/functions
#246
korikuzma
opened
11 months ago
1
Better naming in UTA database module
#245
korikuzma
opened
11 months ago
1
refactor: use enum for strand
#244
korikuzma
closed
11 months ago
0
Merge progress from tech the halls
#243
korikuzma
closed
11 months ago
0
style: use ruff for formatting
#242
jsstevenson
closed
11 months ago
0
fix: polars InvalidOperationError
#241
korikuzma
closed
11 months ago
0
test: make doctests work
#240
jsstevenson
closed
11 months ago
0
Revisit PostgreSQL connection code
#239
jsstevenson
opened
11 months ago
2
chore: rm pipfile lock references in .gitignore
#238
korikuzma
closed
11 months ago
0
Resolve TODOs in `test_get_longest_compatible_transcript`
#237
korikuzma
closed
10 months ago
1
build: remove pipenv support
#236
jsstevenson
closed
11 months ago
0
fix!: return inter-residue positions instead of zero-based positions
#235
korikuzma
closed
11 months ago
0
build: use pyproject.toml for build config
#234
jsstevenson
closed
11 months ago
0
docs: add README links
#233
jsstevenson
closed
11 months ago
0
Gene name inputs
#232
jsstevenson
opened
11 months ago
1
remove `pipenv`
#231
jsstevenson
closed
11 months ago
2
Update type annotation in `MANETranscript.g_to_mane_c`
#230
jsstevenson
closed
11 months ago
1
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