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GreenleafLab
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ArchR
ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)
MIT License
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How to transform Signac (Seurat) object into ArchR ?
#1966
wanglu2014
opened
1 year ago
1
Constrained Gene Integration Error
#1963
jeerthik
closed
1 year ago
1
Error with addReproduciblePeakSet() in finding MACS2
#1961
cristanchoa
opened
1 year ago
3
getMatrixFromProject error with 10x multiomes data and custom species
#1957
Goultard59
closed
1 year ago
1
cannot create custom genome for mm39 using TxDb and BSgenome
#1954
sidwekhande
opened
1 year ago
1
Update auto-comment.yml
#1953
rcorces
closed
1 year ago
0
Update the reference of addMotifAnnotations
#1952
Gavin-Lijy
closed
1 year ago
2
error in using addCoAccessibility with 'cellsToUse '
#1951
Linshiqi-Git
closed
1 year ago
2
error of adding GeneIntegrationMatrix
#1950
schnappi-wkl
closed
1 year ago
3
ERROR createArrowFiles : core dumped
#1949
minghao622
opened
1 year ago
1
Log file does not report the Macs2
#1945
havu73
closed
1 year ago
2
Error not all FeatureDF for asssay is the same!
#1942
schnappi-wkl
opened
1 year ago
1
addInterativeLSI - Error in clusterDF$clusters : $ operator is invalid for atomic vectors
#1940
khsjh
closed
1 year ago
2
Merging Multiple Multiome datasets: Error when adding Gene Expression Matrix
#1938
millerkaplanlab
closed
1 year ago
1
How to deal with dsciATAC data, it's about 50,000 cells per sample.
#1936
Goood2001
opened
1 year ago
1
Error when using a custom motif annotation in addMotifAnnotations()
#1933
xmliu01
closed
1 year ago
2
Error report: getMarkerFeatures(): "Error Found Iteration 1 : [1] "Error in .logError(e, ..."
#1931
OOAAHH
closed
1 year ago
2
Different logFC and FDR in pairwise testing using getMarkerFeatures() depending on order of groups
#1926
mireiacodina
closed
1 year ago
3
Add fontsize change for plotBrowserTrack
#1925
Goultard59
closed
1 year ago
0
Error creating ArrowFiles : Character(0)
#1923
SaharBJ
opened
1 year ago
2
Error in subsetArchRProject: Error in loadArchRProject(path = outputDirectory) : all(file.exists(zfiles)) is not TRUE
#1922
YuZhengM
opened
1 year ago
6
Error in getMatrixFromProject: "Error in H5Dread(h5dataset = h5dataset, h5spaceFile = h5spaceFile, h5spaceMem = h5spaceMem, :"
#1921
YuZhengM
closed
1 year ago
2
addGeneIntegrationMatrix: Error in h5read(ArrowFile, paste0(subGroup, "/Info/FeatureDF"))
#1920
vikon72
closed
1 year ago
4
copy ArchR outputs to another computer, how to change the working directory sorted in ArchR objects.
#1919
Gavin-Yinld
closed
1 year ago
4
Questions about differential peak analysis. getMarkerFeatures() with binomial, turns out error 'Binomial test requires binarization!'
#1912
hjh-air-cond
closed
1 year ago
3
peak calling using NFR fragments
#1909
ivanferrreira
closed
1 year ago
2
How to extract single cell TF deviations and z score for specific TFs?
#1899
chaigsh
closed
1 year ago
1
Problem with import10xFeatureMatrix
#1894
eileen316
closed
1 year ago
3
How to add blacklist to custom zebrafish archr genome??
#1893
rlawltn9718
closed
1 year ago
2
Seurat FindClusters() Error when running addDoubletScores() and addIterativeLSI() ----> no slot of name "i" for this object of class "Graph"
#1891
solvi808
opened
1 year ago
6
Getting stuck counting barcodes
#1885
GrafZahl1234
closed
1 year ago
4
Error thrown from .identifyGroupsForPseudoBulk: error in evaluating the argument 'i' in selecting a method for function '[': argument 1 is not a vector>
#1881
Dazcam
closed
1 year ago
2
Error when subsetArchRProject
#1880
fe4960
opened
1 year ago
12
Error in importing multiome data from the ENCODE project
#1877
dagarfield
closed
1 year ago
6
addReproduciblePeakSet()
#1873
ybaeus
closed
1 year ago
3
IterativeLSI with large sample size
#1871
Pengfei-Dong
closed
1 year ago
17
Get strange results in GeneScore visualization
#1868
YangJAT
closed
1 year ago
2
ERROR Found in .addGeneScoreMat for (bladder : 1 of 1)
#1862
houruiyan
closed
1 year ago
11
address ARMA_64BIT_WORD issue for large matrices
#1861
rcorces
closed
1 year ago
0
Error creating Arrowfiles with the tutorial data
#1860
Gregjlt
closed
1 year ago
7
Error in .getCoverageMetadata(ArchRProj = ArchRProj, groupBy = groupBy, : No Coverage Metadata found for : Leiden_Clusters. Please run addGroupCoverages! Traceback:
#1859
shaistamadad
closed
1 year ago
2
Error in ArchRProject: <simpleError in H5Fclose(file$H5Identifier): HDF5. File accessibility. Unable to close file.>
#1858
YuZhengM
closed
1 year ago
3
create Arrow Files Waiting Time Too long
#1856
WangHaoPlan
closed
1 year ago
3
Inspect Arrow Files Waiting Time Too long + No Responses
#1853
KuroToaster
closed
1 year ago
4
plotFootprints
#1850
huangmiao1996
closed
1 year ago
4
Error in addDoubletScores : memory not mapped
#1846
mycho830
closed
1 year ago
2
After imputeMatrix, NAs & NANs introduced into matrix
#1845
CoderMatthias
closed
1 year ago
4
The `size` parameter in `plotEmbedding()` cannot work.
#1841
jiangpuxuan
closed
1 year ago
2
Cannot install ArchR
#1837
jeromejh
closed
1 year ago
4
Filtered barcode /cell list
#1834
Guliariel
closed
1 year ago
2
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