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GreenleafLab
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ArchR
ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)
MIT License
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A spelling error in Manual.
#2073
jiangpuxuan
opened
11 months ago
2
ArchRProject
#2070
TingTingShao
opened
12 months ago
1
error of addGeneIntegrationMatrix : <simpleError in dimnames(x) <- dn: length of 'dimnames' [1] not equal to array extent>
#2069
XiaoKaixuan12333
opened
12 months ago
5
Error Report - an errorcreateArrowFiles has encountered an error
#2065
wbszhu
closed
1 year ago
3
Installing the package
#2064
jeromejh
opened
1 year ago
2
Error addGeneIntegrationMatrix "Error in .getPartialMatrix(getArrowFiles(subProj)"
#2063
ZayaAyush
opened
1 year ago
1
Sparse_Marginsum Error Running IterativeLSI
#2059
S-Rajhans
opened
1 year ago
11
Remove no space requirement for paths in AllClasses.R
#2054
arprieve
opened
1 year ago
0
addGeneIntegrationMatrix fails with tutorial dataset and Seurat 5.0.0
#2052
chloeacolson
opened
1 year ago
2
No rownames for peakmatrix from the ArchR project
#2051
venkan
opened
1 year ago
2
Matrix 1.6-2 breaking irlba
#2050
frac2738
opened
1 year ago
7
Harmony package installed and loaded but when attempting addHarmony, the package 'does not exist'
#2048
SaharBJ
opened
1 year ago
1
Error during addDoubletScores
#2045
yangshichen0713
opened
1 year ago
2
Error with addGeneIntegrationMatrix() - length of 'dimnames' [1] not equal to array extent - (persists even with tutorial data)
#2042
dgagler
closed
1 year ago
8
Error in addGeneIntegrationMatrix() with tutorial data: FN Error occured
#2041
dgagler
closed
1 year ago
1
Error in addGeneIntegrationMatrix() with tutorial data
#2040
dgagler
closed
1 year ago
4
Solved, I am sorry, please delete this issue.
#2034
ChangLiu23UIC
closed
1 year ago
2
PositiveTFHeatmap
#2033
Sky970415
opened
1 year ago
0
Error in h5read(x, paste0(useMatrix, "/Info/Units")): Object 'PeakMatrix/Info/Units' does not exist in this HDF5 file.
#2031
Alpha-LiCan
opened
1 year ago
2
archR error： Error in selectChildren(pids[!fin], -1)：file descriptor is too large for select()
#2029
lynxiaoqi
closed
1 year ago
2
Error Report - addGeneIntegrationMatrix()-Attempting to add a different number of cells and/or features
#2027
yetingliytl
opened
1 year ago
1
Another error with addIterativeLSI - "Error in clusterDF$clusters : $ operator is invalid for atomic vectors"
#2025
solvi808
opened
1 year ago
2
use PBMC but only 28 cells are obtained from fragments.tsv.zg
#2024
Alpha-LiCan
closed
1 year ago
3
addIterativeLSI error
#2023
khsjh
opened
1 year ago
2
createArrowFiles has encountered an error
#2021
gmcregis
opened
1 year ago
1
Gene Seqnames not in GenomeAnnotation chromSizes
#2020
HaixJiang
closed
1 year ago
3
addReproduciblePeakSet could not get same result
#2018
zhangqc723
opened
1 year ago
1
tutorial data run createArrowFiles error
#2017
felixlee0608
opened
1 year ago
1
Add rworkflows GitHub Actions
#2016
bschilder
opened
1 year ago
4
`subscript out of bonds` error when adding motif annotations
#2014
ndejay
opened
1 year ago
1
error in addGroupCoverages(ArchRProj = mp, groupBy = "Sample")
#2013
yangchao4
opened
1 year ago
2
Error when using addClusters() on multiome data
#2011
klgoss
opened
1 year ago
18
Error in addDoubletScores
#2009
zhangyina
opened
1 year ago
3
Update GroupExport.R
#2006
joshchiou
closed
1 year ago
1
plotBrowserTrack()：cannot change the range of y-axis when plotting peak track
#2004
jinbufan
closed
1 year ago
2
Bug in addGeneExpressionMatrix using Mouse Data
#2000
Nahuck
opened
1 year ago
3
Error in addGeneIntegrationMatrix / abnormally high number of communities
#1999
Khreat0205
opened
1 year ago
12
How to clusters cells in ArhcR with Signac cluster labels?
#1996
momur
closed
1 year ago
1
plotMarkerHeatmap cannot produce the plot
#1995
travilucas
opened
1 year ago
2
Potential pitfall when the subset indices is a Rle vector of TRUE and FALSE
#1994
andyyhchen
closed
1 year ago
2
idxATAC not match
#1991
xmliu01
opened
1 year ago
1
GroupCoverage file path doesn't update saveArchRProject
#1988
evaham1
opened
1 year ago
7
Error when indexing bam with createArrowFiles()
#1987
dgagler
closed
1 year ago
1
I would like to export the matrix the is used to plot gene2peak heatmap. I have seen previous conversations that shows how to export the correlation of each gene, but I would love to see the differences between the clusters I have chose to plot. Is there a way?
#1985
marmar20000
closed
1 year ago
1
Hi! Thanks so much for archr it's a great package!
#1984
marmar20000
closed
1 year ago
1
License type unclear
#1983
ivirshup
closed
1 year ago
2
error addGeneIntegrationMatrix: formal argument "groupRNA" matched by multiple actual arguments
#1981
tingxie2020
opened
1 year ago
8
How to specify peak range using addReproduciblePeakSet() function ?
#1971
heomanism
closed
1 year ago
1
How to investigate specific gene target using ArchR?
#1970
OMIC-coding
opened
1 year ago
1
Can we get FRIP after call peaks?
#1968
Pengfei-Dong
closed
1 year ago
1
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