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HenrikBengtsson
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CBI-software
A Scientific Software Stack for HPC (CentOS oriented)
https://wynton.ucsf.edu/hpc/software/software-repositories.html
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R: Set env var UDUNITS2_INCLUDE R's module file
#23
HenrikBengtsson
closed
3 years ago
1
R: conditional dependency on the 'scl-devtoolset' module
#22
HenrikBengtsson
closed
3 years ago
2
NOTE: R package 'regsem' fail to install with gcc 7.3.1
#21
HenrikBengtsson
closed
2 years ago
3
SOFTWARE: get-port
#20
HenrikBengtsson
closed
1 year ago
1
R: Don't install 'recommended' packages
#19
HenrikBengtsson
closed
2 years ago
3
openjdk: Add support for 'man java' too
#18
HenrikBengtsson
opened
3 years ago
1
SRA Toolkit: Workaround to avoid crashing host due to BeeGFS overload
#17
HenrikBengtsson
closed
3 years ago
3
R: Minimal gcc versions in order to support C++14 and C++17?
#16
HenrikBengtsson
closed
2 years ago
1
salmon: Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment
#15
HenrikBengtsson
closed
3 years ago
1
cmake 3: No need to install from source since cmake3 exists - just add cmake -> cmake3 link to PATH
#14
HenrikBengtsson
closed
2 years ago
1
DOCS: Document how to build software using these tools
#13
HenrikBengtsson
closed
2 years ago
4
bedtools2: 'make all' gets stuck in a loop
#12
HenrikBengtsson
closed
3 years ago
0
bashdb: A debugger for Bash script
#11
HenrikBengtsson
closed
3 years ago
4
r: Update R_REPOS_ROOT to /wynton/group/... from /wynton/home/...
#10
HenrikBengtsson
opened
4 years ago
0
CLEANUP: Only keep most recent versions for some software
#9
HenrikBengtsson
closed
4 years ago
1
Non-supported should signal an error if loaded
#8
HenrikBengtsson
closed
4 years ago
1
sratoolkit: Fails on Wynton
#7
HenrikBengtsson
closed
4 years ago
1
ffmpeg
#6
HenrikBengtsson
closed
1 year ago
3
BUG: FIx VERSION_X_Y
#5
HenrikBengtsson
closed
4 years ago
0
R: Need to load 'zlib' module on TIPCC
#4
HenrikBengtsson
closed
2 years ago
1
BUG: Use pushenv() instead of setenv() where applicable
#3
HenrikBengtsson
closed
4 years ago
0
Bowtie2: not working on Wynton HPC?
#2
HenrikBengtsson
closed
4 years ago
1
R: CentOS and CBI installation are not fully compatible
#1
HenrikBengtsson
closed
2 years ago
6
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