issues
search
HenrikBengtsson
/
CBI-software
A Scientific Software Stack for HPC (CentOS oriented)
https://wynton.ucsf.edu/hpc/software/software-repositories.html
5
stars
2
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Observation - Automated timeout seems to happen when long-running package installs are happening.
#73
hgputnam
closed
1 year ago
2
R: Assert 'java' and 'javac' are of same version
#72
HenrikBengtsson
closed
2 years ago
1
Avoid _JAVA_OPTIONS warning by explicitly unset for tools setting option
#71
HenrikBengtsson
opened
2 years ago
0
shellharden: build from source
#70
HenrikBengtsson
opened
2 years ago
0
picard: rename 'picard' to 'PicardCommandLine':
#69
HenrikBengtsson
closed
2 years ago
0
libarrow: Provide pre-built/pre-compiled version to speed up R installation of 'arrow'
#68
HenrikBengtsson
opened
2 years ago
0
kallisto 0.48.0: libstdc++.so.6 errors
#67
HenrikBengtsson
closed
10 months ago
4
conda-stage: assert that shell is bash and not only sh
#66
HenrikBengtsson
closed
2 years ago
0
picard & snpeff: Use functions instead of aliases(?)
#65
HenrikBengtsson
closed
1 year ago
1
miniconda: auto source to avoid need for 'conda init'
#64
HenrikBengtsson
closed
2 years ago
1
R: Set CMAKE_BIN=$(command -v cmake3)
#63
HenrikBengtsson
closed
2 years ago
1
R: Configure JAVA_HOME before 'build'
#62
HenrikBengtsson
closed
1 year ago
4
R: rJava::.jinit() stalls when installed with gcc 11.2.1
#61
HenrikBengtsson
closed
7 months ago
8
conda-stage: warn when used in non-bash shell
#60
HenrikBengtsson
closed
2 years ago
0
Don't expand env vars when creating aliases
#59
HenrikBengtsson
closed
2 years ago
1
R: Find a more stable JAVA_HOME path
#58
HenrikBengtsson
closed
2 years ago
2
rstudio-server: make config fails with v2022.02.1-461
#57
HenrikBengtsson
closed
2 years ago
1
SOFTWARE: pdfcrop
#56
HenrikBengtsson
closed
1 year ago
2
r: Make agile to actual GCC version used
#55
HenrikBengtsson
closed
1 year ago
0
Question for my own education
#54
hgputnam
closed
2 years ago
6
TESTS: Add unit test for installed software
#53
HenrikBengtsson
closed
1 year ago
1
fzf: formatting issue
#52
HenrikBengtsson
closed
2 years ago
0
hisat2: Installed files are writable by group(!)
#51
HenrikBengtsson
closed
2 years ago
1
gistic2: Installed files are writable by group and some by other(!)
#50
HenrikBengtsson
closed
2 years ago
2
IGV: Installed files are writable by group(!)
#49
HenrikBengtsson
closed
2 years ago
1
rstudio-server: rsession --version gives a generic dev version
#48
HenrikBengtsson
closed
1 year ago
1
ROBUSTNESS: Remove write permission for user who does the installation
#47
HenrikBengtsson
closed
2 years ago
1
Cutadapt make - python2 module
#46
hgputnam
closed
2 years ago
11
Installing on Centos7
#45
hgputnam
closed
2 years ago
3
Java: Make Java respect scheduler memory limits
#44
HenrikBengtsson
opened
2 years ago
0
make TMPDIR optional for installing software
#43
HenrikBengtsson
closed
2 years ago
0
Load multiple versions of a module
#42
HenrikBengtsson
opened
2 years ago
0
JupyterLab: Some notes
#41
HenrikBengtsson
opened
2 years ago
2
User request for older star version
#40
hgputnam
closed
2 years ago
4
Java: Make Java respect TMPDIR
#39
HenrikBengtsson
opened
2 years ago
1
rstudio: limit the number of threads?
#38
HenrikBengtsson
opened
2 years ago
0
Detect when RPATH is used
#37
HenrikBengtsson
closed
9 months ago
2
GEOS: new url and new version
#36
HenrikBengtsson
closed
2 years ago
1
Modules: Use Lua multi-line strings for the 'Description:' entries
#35
HenrikBengtsson
closed
2 years ago
0
Add Maintainer field
#34
HenrikBengtsson
closed
2 years ago
2
Question regarding scl-devtoolset conversion to module
#33
hgputnam
closed
2 years ago
9
SOFTWARE: DMTCP - checkpointing processes
#32
HenrikBengtsson
closed
2 years ago
2
R: Need to rerun `R CMD javareconf` whenever a new Java version is installed
#31
HenrikBengtsson
closed
2 years ago
5
Modules: Add customized links to documentation, support, source code, ...
#30
HenrikBengtsson
closed
2 years ago
2
BUG: openjdk broken because version is too specific and out of sync
#29
HenrikBengtsson
closed
2 years ago
0
Modules: Add 'ChangeLog: <URL>' component for all software tools
#28
HenrikBengtsson
closed
2 years ago
2
UPDATE: September 2021
#27
HenrikBengtsson
closed
2 years ago
1
SOFTWARE: GISTIC 2.0
#26
HenrikBengtsson
closed
2 years ago
0
DOCS: Add README.md
#25
HenrikBengtsson
closed
2 years ago
1
R: Building R with SCL add dependents on SCL libraries
#24
HenrikBengtsson
closed
2 years ago
0
Previous
Next