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HumanBrainProject
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neuroglancer-scripts
Conversion of neuroimaging data for display in Neuroglancer
MIT License
27
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18
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feat: add read/write support for n5
#43
xgui3783
opened
2 days ago
0
[feature request] add read support for n5/ome-zarr datasource
#42
xgui3783
opened
4 days ago
3
Add tests for Python 3.12 and modernize code quality checks
#41
ylep
closed
4 months ago
0
Fixes for upstream updates of NumPy and Nibabel
#40
ylep
closed
4 months ago
0
compressed_segmentation encoder generates invalid data under NumPy 2.0
#39
ylep
closed
4 months ago
0
fix: formatted info json
#38
xgui3783
closed
4 months ago
3
[feature request] neuroglancer http accessor profiler
#37
xgui3783
opened
11 months ago
2
[feature request ?] dropping support for py3.5 (ideally also py3.6 and py3.7)
#36
xgui3783
closed
10 months ago
2
Feat: adding support for sharded precomputed
#35
xgui3783
closed
10 months ago
4
Fix Codecov upload
#34
ylep
closed
1 year ago
1
enh: improve read perf of http accessor by using requests.Session
#33
xgui3783
closed
1 year ago
2
Support for chunking dataset in memory
#32
PolarBean
closed
1 year ago
2
[bug] RGB nifti encoding standard unclear
#31
xgui3783
opened
1 year ago
0
Make support for Python 3.11 official + fix warnings
#30
ylep
closed
1 year ago
4
feat: add data_type and encoding to volume to pyramid function
#29
xgui3783
closed
1 year ago
2
fix nibabel get_data deprecation
#28
xgui3783
closed
1 year ago
5
Restrict nibable to compatible versions
#27
blowekamp
closed
1 year ago
3
Add Gzip compresslevel option to FileAccessor and command line
#26
ylep
closed
1 year ago
2
update github action trigger
#25
xgui3783
closed
1 year ago
4
Add Gzip compresslevel option to FileAccessor and command line
#24
blowekamp
closed
1 year ago
7
bugfix: erroneous implementation of reading RGB nifti
#23
xgui3783
closed
1 year ago
5
RGB nifti does not work with `volume-to-precomputed-pyramid` out of the box
#22
xgui3783
opened
2 years ago
0
Apache config
#21
manoaman
closed
1 year ago
17
Separate PIP cache by Python version
#20
ylep
closed
2 years ago
1
Fix GitHub Actions configuration
#19
ylep
closed
2 years ago
1
Not enough memory
#18
stephen-zhouyang
closed
2 years ago
1
feat: push releases to pypi
#17
xgui3783
closed
2 years ago
1
chore: migrate ci to github action
#16
xgui3783
closed
3 years ago
4
feat: support rgb nifti
#15
xgui3783
closed
3 years ago
0
feat: support lzw compression tiffs
#14
xgui3783
closed
3 years ago
0
[feature request] support RGB24 in nifti and multichanneled tiff (RGB)
#13
xgui3783
closed
3 years ago
1
get_accessor_for_url doesn't recognize Windows filesystem paths
#12
sevaa
closed
1 year ago
1
pypi version has bug
#11
falkben
closed
6 years ago
1
tqdm causes slices-to-precomputed to fail
#10
falkben
closed
3 years ago
2
allow uint64 images load correctly in scikit-image
#9
falkben
closed
6 years ago
1
uint64 TIFF files not loading (scikit-image loader only supports strings as input not Path objects)
#8
falkben
closed
6 years ago
0
flat files not created with '--flat' option using slices-to-precomputed command
#7
falkben
closed
6 years ago
2
Off-by-one when converting Nifti with scaling to integer data_type
#6
ylep
closed
6 years ago
1
UnboundLocalError: local variable 'triangles' referenced before assignment
#5
xgui3783
closed
6 years ago
1
conversion of nii file to segmentations, NG does not properly display converted segment if original encoding is float instead of uint
#4
xgui3783
closed
6 years ago
1
Add options to output data in a way directly consummable by neuroglancer
#3
pacher
closed
6 years ago
0
Add option to load full volume to memory
#2
pacher
closed
7 years ago
2
Add converter from STL ASCII to pre-computed NG mesh format
#1
pacher
closed
7 years ago
0