ODEMM - ODE constrained mixture modeling

ODEMM is a toolbox for modeling heterogeneous cell populations in MathWorks MATLAB using mixture models and ordinary differential equation (ODE) models.

ODEMM offers

• models that are able to include mechanistic descriptions of the means of individual subpopulations, and
• hierarchical population models that incorporate means and covariances of the individual subpopulations.

These models are demonstrated in several examples included in the examples/ directory.

Installation

If the repository was cloned, install_ODEMM.m needs to be run to add the folders to the MATLAB search path. If the zip archive was downloaded the archive needs to be unzipped before executing the installation script.

Licensing

See the LICENSE file in the ODEMM source directory.

Documentation

The usage of ODEMM is shown in some examples. Documentation is available in ODEMMdoc.pdf.