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ICB-DCM
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parPE
Parameter estimation for dynamical models using high-performance computing, batch and mini-batch optimizers, and dynamic load balancing.
MIT License
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Add option to specify maximum number of threads for multi-start optimization
#361
dweindl
closed
3 years ago
1
Various cleanup
#360
dweindl
closed
3 years ago
1
Option to specify maximum number of threads
#359
dweindl
closed
3 years ago
0
CI: Update sonar scanner
#358
dweindl
closed
3 years ago
1
Update AMICI to v0.11.19
#357
dweindl
closed
3 years ago
1
Docker image with fides optimizer
#356
dweindl
closed
3 years ago
1
Added a draft for minibatch optimization documentation
#355
paulstapor
closed
3 years ago
2
Update AMICI
#354
dweindl
closed
3 years ago
1
Feature parpe to pypesto history
#353
PaulJonasJost
opened
3 years ago
3
Release 0.4.7
#352
dweindl
closed
3 years ago
1
Fix documentation build
#351
dweindl
closed
3 years ago
1
Update AMICI to v0.11.18
#350
dweindl
closed
3 years ago
1
Converting result files to pypesto format
#349
dweindl
opened
3 years ago
0
Make HDF5 output more configurable
#348
dweindl
opened
3 years ago
0
Update AMICI to develop@8ef53c88
#347
dweindl
closed
3 years ago
1
Cleanup PEtab import
#346
dweindl
closed
3 years ago
1
Fix race condition with parallel HDF5 calls
#345
dweindl
closed
3 years ago
1
Fix HDF5 generation for state reinitialization with estimated initial…
#344
dweindl
closed
3 years ago
1
Support for forward sensitivities
#343
dweindl
opened
3 years ago
0
Release 0.4.6
#342
dweindl
closed
3 years ago
1
Update AMICI to v0.11.17
#341
dweindl
closed
3 years ago
1
Add optimizer: fides-cpp
#340
dweindl
closed
3 years ago
1
Update AMICI (v0.11.16)
#339
dweindl
closed
3 years ago
1
Fetch googletest and change to .cpp for IDE integration
#338
dweindl
closed
3 years ago
1
Update DLIB optimizer interface
#337
dweindl
closed
3 years ago
2
Update AMICI to v0.11.15
#336
dweindl
closed
3 years ago
1
Update supermuc build script
#335
dweindl
closed
3 years ago
1
Fix: ICC does not support <filesystem>
#334
dweindl
closed
3 years ago
1
Fix/update IpOpt download script for better handling of libcoinhsl
#333
dweindl
closed
3 years ago
1
CI: Update benchmark models tests / add new models
#332
dweindl
closed
3 years ago
1
Grad check cl
#331
paulstapor
closed
3 years ago
0
fix adjoint preequilibration with singular jacobians
#330
paulstapor
closed
3 years ago
2
git subrepo clone --branch=develop --force git@github.com:AMICI-dev/A…
#329
paulstapor
closed
3 years ago
1
Update dependencies
#328
dweindl
closed
3 years ago
1
Release 0.4.5
#327
dweindl
closed
3 years ago
1
enabled commandline with number of indices as argument
#326
PaulJonasJost
opened
3 years ago
3
Implement PEtab/PySB import
#325
dweindl
opened
3 years ago
0
Implement PEtab-based state reinitialization
#324
dweindl
closed
3 years ago
0
Update documentation
#323
dweindl
closed
3 years ago
1
Update documentation / add python
#322
dweindl
closed
3 years ago
1
Update to AMICI 0.11.13
#321
dweindl
closed
3 years ago
1
Fix and use updated gradient check
#320
dweindl
closed
3 years ago
1
gradient check CLI: allow specifying parameter index/ID
#319
dweindl
opened
3 years ago
0
CMake: Find MPI
#318
dweindl
closed
3 years ago
1
CI: Show all compiler errors and treat as error
#317
dweindl
closed
3 years ago
0
Update to Ceres 2.0.0
#316
dweindl
closed
3 years ago
1
Multi-epsilon gradient-check
#315
PaulJonasJost
closed
3 years ago
4
Update ipopt installation guide/script
#314
PaulJonasJost
closed
3 years ago
1
Proper CMake package configuration
#313
dweindl
closed
3 years ago
1
Use HDF5 C++ API where possible
#312
dweindl
closed
3 years ago
1
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