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IKIM-Essen
/
uncovar
Transparent and robust SARS-CoV-2 variant calling and lineage assignment with comprehensive reporting.
https://ikim-essen.github.io/uncovar
BSD 2-Clause "Simplified" License
20
stars
7
forks
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chore(deps): bump amannn/action-semantic-pull-request from 4 to 5
#567
dependabot[bot]
closed
1 year ago
1
chore(deps): bump actions/checkout from 2 to 3.1.0
#566
dependabot[bot]
closed
1 year ago
1
chore(deps): bump github/super-linter from 4.9.6 to 4.9.7
#565
dependabot[bot]
closed
1 year ago
0
chore(deps): bump actions/checkout from 2 to 3
#564
dependabot[bot]
closed
1 year ago
1
chore(deps): bump snakemake/snakemake-github-action from 1.23.0 to 1.24.0
#563
dependabot[bot]
closed
1 year ago
0
fix: update channel priorities and snakemake wrappers
#562
alethomas
closed
1 year ago
0
refactor: Update medaka and deps for ont
#561
simakro
closed
1 year ago
0
chore(deps): bump alstr/todo-to-issue-action from 4.6 to 4.7
#560
dependabot[bot]
closed
1 year ago
1
feat: Add first init rule
#559
vBassewitz
opened
2 years ago
0
fix: Revert "fix disable ont actions"
#558
alethomas
closed
10 months ago
0
chore(deps): bump github/super-linter from 4.9.4 to 4.9.6
#557
dependabot[bot]
closed
2 years ago
0
Remove Masked polished sequence from reporting. RKI Only
#556
alethomas
opened
2 years ago
0
fix: disable ont actions
#555
alethomas
closed
2 years ago
0
fix: disable ont action
#554
alethomas
closed
2 years ago
0
fix: update medaka version
#553
alethomas
closed
1 year ago
1
refactor: Fgbio read clipping
#552
alethomas
opened
2 years ago
0
fix: Revert "refactor: fgbio read clipping"
#551
alethomas
closed
2 years ago
0
build: update Pangolin to 4.1.2
#550
github-actions[bot]
closed
2 years ago
0
refactor: merge master in branch
#549
lenakinzel
closed
2 years ago
0
chore(deps): bump actions/setup-python from 3 to 4.1.0
#548
dependabot[bot]
closed
2 years ago
0
build: update Pangolin to 4.1.1
#547
github-actions[bot]
closed
2 years ago
0
build: update Pangolin to 4.1
#546
github-actions[bot]
closed
2 years ago
0
refactor: fgbio read clipping
#545
alethomas
closed
2 years ago
0
fix: Replace outdated df append
#544
vBassewitz
closed
2 years ago
0
chore(deps): bump actions/setup-python from 3 to 4
#543
dependabot[bot]
closed
2 years ago
1
chore(deps): bump pre-commit/action from 2.0.3 to 3.0.0
#542
dependabot[bot]
closed
2 years ago
0
fix: voc probability
#541
alethomas
closed
2 years ago
0
chore(deps): bump github/super-linter from 4.9.2 to 4.9.4
#540
dependabot[bot]
closed
2 years ago
1
chore(deps): bump github/super-linter from 4.9.2 to 4.9.3
#539
dependabot[bot]
closed
2 years ago
1
master and dev branch
#538
alethomas
opened
2 years ago
1
Add a first init rule
#537
alethomas
opened
2 years ago
0
chore(master): release 0.15.1
#536
github-actions[bot]
closed
1 year ago
1
chore(deps): bump docker/setup-qemu-action from 1 to 2
#535
dependabot[bot]
closed
2 years ago
0
chore(deps): bump docker/build-push-action from 2 to 3
#534
dependabot[bot]
closed
2 years ago
0
chore(deps): bump docker/setup-buildx-action from 1 to 2
#533
dependabot[bot]
closed
2 years ago
0
chore(deps): bump docker/login-action from 1 to 2
#532
dependabot[bot]
closed
2 years ago
0
fix: squeeze
#531
alethomas
closed
2 years ago
0
fix: squeeze is deprecated
#530
alethomas
closed
2 years ago
0
fix: change pre-commit version
#529
alethomas
closed
2 years ago
0
build: update Pangolin to 4.0.6
#528
github-actions[bot]
closed
2 years ago
0
fix: change status to qc_status
#527
alethomas
closed
2 years ago
0
build: update Pangolin to 4.0.5
#526
github-actions[bot]
closed
2 years ago
0
build: update Pangolin to 4.0.4
#525
github-actions[bot]
closed
2 years ago
0
chore(deps): bump actions/upload-artifact from 2 to 3
#524
dependabot[bot]
closed
2 years ago
0
fix(ci): update black to rev 22.3.0
#523
thomasbtf
closed
2 years ago
1
build: update Pangolin to 4.0.2
#522
github-actions[bot]
closed
2 years ago
0
build: update Pangolin to 4.0.1
#521
github-actions[bot]
closed
2 years ago
0
chore(deps): bump github/super-linter from 4.9.1 to 4.9.2
#520
dependabot[bot]
closed
2 years ago
0
feat: benchmarking with other workflows
#519
thomasbtf
closed
5 months ago
0
Include coverage plots in wastewater report
#518
thomasbtf
opened
2 years ago
0
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