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IKIM-Essen
/
uncovar
Transparent and robust SARS-CoV-2 variant calling and lineage assignment with comprehensive reporting.
https://ikim-essen.github.io/uncovar
BSD 2-Clause "Simplified" License
20
stars
7
forks
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feat(deps): update Pangolin to 3.1.20
#467
github-actions[bot]
closed
2 years ago
0
chore(deps): bump alstr/todo-to-issue-action from 4.5.4 to 4.6
#466
dependabot[bot]
closed
2 years ago
0
chore(deps): bump amannn/action-semantic-pull-request from 3.6.0 to 4
#465
dependabot[bot]
closed
2 years ago
0
chore: update copyright preamble
#464
github-actions[bot]
closed
2 years ago
0
chore: update copyright preamble
#463
github-actions[bot]
closed
2 years ago
0
fix: fixed include flag sample order
#462
AKBrueggemann
closed
2 years ago
0
build: update Pangolin to 3.1.19
#461
github-actions[bot]
closed
2 years ago
0
build: update Pangolin to 3.1.18
#460
github-actions[bot]
closed
2 years ago
1
chore(deps): bump github/super-linter from 4.8.6 to 4.8.7
#459
dependabot[bot]
closed
2 years ago
0
chore(deps): bump github/super-linter from 4.8.5 to 4.8.6
#458
dependabot[bot]
closed
2 years ago
0
fix: remove removal of .indicators/replacement_notice.txt for int
#457
thomasbtf
closed
2 years ago
1
Question: anonynmous file
#456
alethomas
closed
2 years ago
3
chore: update copyright preamble
#455
github-actions[bot]
closed
2 years ago
0
perf: optimisations for ont - barcode+adapter-trimming, primer-trimming (porechop) and read correction (Canu)
#454
simakro
closed
2 years ago
1
chore(deps): bump alstr/todo-to-issue-action from 4.5.3 to 4.5.4
#453
dependabot[bot]
closed
2 years ago
0
fix: fixed include flag KeyError
#452
AKBrueggemann
closed
2 years ago
0
fix: include flag fix
#451
AKBrueggemann
closed
2 years ago
1
docs: description to customize the primer bed file
#450
AKBrueggemann
closed
2 years ago
1
fix: bump rust-bio-tools to 0.38
#449
thomasbtf
closed
2 years ago
0
fix: reset overview table formatter to older version
#448
thomasbtf
closed
2 years ago
0
feat: rule and script bed_to_bedpe
#447
AKBrueggemann
closed
2 years ago
10
chore(master): release 0.14.0
#446
github-actions[bot]
closed
2 years ago
1
fix: correct filtering in df
#445
alethomas
closed
2 years ago
0
fix: rename column
#444
alethomas
closed
2 years ago
0
feat: make incoming and archive structure data-handling optional
#443
lenakinzel
closed
2 years ago
1
chore(master): release 0.13.2
#442
github-actions[bot]
closed
2 years ago
1
chore(deps): bump amannn/action-semantic-pull-request from 3.5.0 to 3.6.0
#441
dependabot[bot]
closed
2 years ago
0
chore(master): release 0.13.1
#440
github-actions[bot]
closed
2 years ago
1
fix: wrong enumeration with kallisto included
#439
alethomas
closed
2 years ago
1
chore(master): release 0.13.0
#438
github-actions[bot]
closed
2 years ago
1
chore: update copyright preamble to 2022 🎇
#437
thomasbtf
closed
2 years ago
0
chore(deps): bump GoogleCloudPlatform/release-please-action from 2 to 3
#436
dependabot[bot]
closed
2 years ago
0
chore: release 0.12.0
#435
github-actions[bot]
closed
2 years ago
1
chore: update copyright preamble
#434
github-actions[bot]
closed
2 years ago
0
fix: generate high quality report .csv file
#433
thomasbtf
closed
2 years ago
0
Implement automatic primer resources for ARTIC v3 + v4
#432
alethomas
opened
2 years ago
0
chore: release 0.11.1
#431
github-actions[bot]
closed
2 years ago
0
Add CoVarPlot
#430
thomasbtf
opened
2 years ago
0
feat: add varlociraptor test case generation
#429
thomasbtf
closed
2 years ago
0
chore: add temp flags
#428
thomasbtf
closed
2 years ago
0
feat: add prettier to pre-commit
#427
thomasbtf
closed
2 years ago
0
chore(deps): bump github/super-linter from 4.8.4 to 4.8.5
#426
dependabot[bot]
closed
2 years ago
0
chore: release 0.11.0
#425
github-actions[bot]
closed
2 years ago
1
feat: update to varlociraptor 4.9
#424
johanneskoester
closed
2 years ago
0
fix: update the mutations columns in the overview table formatter
#423
thomasbtf
closed
2 years ago
0
docs: add comment how to run pre-commit manually
#422
thomasbtf
closed
2 years ago
0
chore: release 0.10.2
#421
github-actions[bot]
closed
2 years ago
1
feat: add patient or environmental mode flag
#420
thomasbtf
closed
2 years ago
0
feat: add optional column for adapters
#419
thomasbtf
closed
2 years ago
0
fix: pangolin input for overview table, bamclipper samtools error, include flag for high quality genome report
#418
thomasbtf
closed
2 years ago
0
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