ISA-tools ISAvalidator-ISAconverter-BIImanager issues

ISA-tools / ISAvalidator-ISAconverter-BIImanager

The ISAvalidator, ISA converter and BII data manager tools

http://www.isa-tools.org

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issues

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Bump h2 from 2.1.210 to 2.2.220 in /val_conv_manager_gui

#79 dependabot[bot] opened 12 months ago
0
Bump h2 from 2.1.210 to 2.2.220 in /import_layer

#78 dependabot[bot] opened 12 months ago
0
Update pom.xml

#77 proccaserra closed 2 years ago
0
Bump xmlbeans from 2.3.0 to 3.0.0 in /import_layer

#76 dependabot[bot] closed 2 years ago
0
Bump commons-beanutils from 1.8.3 to 1.9.4 in /import_layer

#75 dependabot[bot] closed 2 years ago
0
Bump xercesImpl from 2.8.1 to 2.12.2 in /import_layer

#74 dependabot[bot] closed 2 years ago
0
Bump h2 from 1.3.150 to 2.1.210 in /import_layer

#73 dependabot[bot] closed 2 years ago
0
Bump h2 from 1.3.150 to 2.1.210 in /val_conv_manager_gui

#72 dependabot[bot] closed 2 years ago
0
Bump h2 from 1.3.150 to 2.0.206 in /val_conv_manager_gui

#71 dependabot[bot] closed 2 years ago
1
Bump xercesImpl from 2.8.1 to 2.12.0 in /import_layer

#70 dependabot[bot] closed 2 years ago
1
Bump commons-beanutils from 1.8.3 to 1.9.2 in /import_layer

#69 dependabot[bot] closed 2 years ago
0
TabLoader can't handle square brackets in Characteristics names (headings)

#68 djcomlab opened 7 years ago
0
SRA export does not support genome seq/nucleotide seq measurement/technology combination

#67 djcomlab opened 7 years ago
0
SRA export only picks up first measurement type from i_.txt file

#66 djcomlab opened 7 years ago
0
SRA conversion - if dates in tab are ISO8601 they are not passed to SRA output

#65 djcomlab opened 7 years ago
4
In SRA conversion, one instance of submission date incorrectly formatted

#64 djcomlab closed 7 years ago
2
In SRA conversion, submission.xml missing broker name

#63 djcomlab opened 7 years ago
0
ISAvalidator: issue with multiple terms of controlled vocab

#62 althonos opened 7 years ago
2
Investigation File not found

#61 chrisgorgo opened 8 years ago
7
Line command of ISA converter always exits with same exit code

#60 djcomlab closed 7 years ago
2
hibernate.properties

#59 shaw2thefloor opened 8 years ago
1
MAGEtab export: don't modify dates

#58 agbeltran opened 9 years ago
1
MAGEtab export: skip protocols in protocols in the IDF that are not used in the SDRF

#57 agbeltran opened 9 years ago
0
MAGEtab export: better Unit support

#56 agbeltran opened 9 years ago
0
SRA: Export fails if Derived Data File is present for Sequencing Assay

#55 eamonnmag closed 10 years ago
0
Bii Manager does not import samples into DB.

#54 JustGitting closed 10 years ago
2
Security issue: password in cleartext

#53 sneumann opened 10 years ago
0
Upgrading to SRA 1.5.

#52 agbeltran closed 10 years ago
0
Change defaults in data-locations.xml

#51 eamonnmag closed 10 years ago
0
Verify cascading of factor values from study file to assay files.

#50 agbeltran opened 10 years ago
0
Retain ontology PURL when performing ontology validation

#49 vedina opened 10 years ago
0
Validator reader does not pick up 'Protocol ref'

#48 proccaserra opened 10 years ago
0
Protocol Type not reported but with ontology REF and accession

#47 proccaserra closed 10 years ago
1
Allow for interchangeable position of Term Source REF and Term Accession Number columns

#46 eamonnmag closed 11 years ago
0
Add check to determine if there are blank Factor Value columns.

#45 eamonnmag closed 11 years ago
0
Dangling assay: catch assay which samples are not found in study file

#44 proccaserra closed 11 years ago
0
Check declared protocols are used in the study/assay files

#43 agbeltran closed 11 years ago
1
SRA exporter: add a check to Barcode attribute

#42 proccaserra opened 11 years ago
0
Fixes to SRA1.3 exporter

#41 proccaserra closed 11 years ago
0
Simplify BII Manager installation

#40 agbeltran opened 11 years ago
0
Support ontology definition in qualifiable field headers, e.g. Characteristics

#39 eamonnmag closed 12 years ago
0
Add support for persistence Comment fields in all Investigation file sections.

#38 eamonnmag closed 12 years ago
0
Study names displayed in order of loading not numeric order

#37 HazelMurphy closed 12 years ago
0
Unload study does not display correct study names

#36 HazelMurphy closed 12 years ago
0
Validation of metabolights configurations.

#35 pconesa closed 12 years ago
11
minor fix in metadata requirement: SRA exporter

#34 proccaserra closed 12 years ago
0
SRA test fix

#33 proccaserra closed 12 years ago
0
oops....please get the schema

#32 proccaserra closed 12 years ago
0
upgrade SRA exporter to Schema 1.3

#31 proccaserra closed 12 years ago
0
Upgraded to the new graph2tab

#30 marco-brandizi closed 12 years ago
0