IanevskiAleksandr sc-type issues

IanevskiAleksandr / sc-type

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Perform automated annotation for virally infected cells

#70 casparkfc opened 2 weeks ago
1
bubble plot Duplicate vertex and edges name names

#69 gianmore opened 1 month ago
0
a bug in auto_detect_tissue_type.R

#68 gnilihzeux opened 1 month ago
0
Different cell type scoring dependent on subsamples used

#67 ahoffrichter opened 3 months ago
0
duplicated clusters predicted by sc-type

#66 jasoncrucify opened 4 months ago
0
Error in Z[cell_markers_genes_score[jj, "gene_"], ] : subscript out of bounds

#65 Flu09 closed 5 months ago
1
selecting multiple tissues for analysis

#64 rocanja opened 6 months ago
2
Bug report

#63 rocketeer1998 opened 7 months ago
4
Wrong repository

#62 levinhein closed 7 months ago
0
Barcode file missing

#61 haotianteng closed 7 months ago
1
Update sctype_wrapper.R

#60 IanevskiAleksandr closed 8 months ago
0
Discrepancies in tissue types in ScTypeDB_full.xlsx vs. ScType web app

#59 saracastel opened 8 months ago
3
Update sctype_wrapper.R

#58 IanevskiAleksandr closed 8 months ago
0
Update README.md

#57 IanevskiAleksandr closed 8 months ago
0
Update README.md

#56 IanevskiAleksandr closed 8 months ago
0
edits for seurat5

#55 kris-nader closed 8 months ago
0
General question about the logic of the tool

#54 Flu09 closed 9 months ago
4
data or scaled data for scoring

#53 Yongli-Qi closed 8 months ago
1
Several questions

#52 KevinMaroney closed 8 months ago
2
Differences between short e full DB

#51 martina811 closed 9 months ago
1
Cannot open the connection to gene_sets_prepare.R

#50 Daisy-Chilin closed 9 months ago
1
Cannot find updated db.xlsx file

#49 Larrycpan closed 8 months ago
1
get cell-type by cell matrix

#48 taha1750 closed 8 months ago
2
auto_detect_tissue_type incompatible with a recent change in Seurat

#47 bhayete-empress closed 8 months ago
4
auto_detect_tissue_type error

#46 antoine4ucsd closed 8 months ago
2
"Embryo" sample gene details

#45 kvn95ss closed 8 months ago
1
Error in UseMethod("group_by") : no applicable method for 'group_by' applied to an object of class "NULL"

#44 changostraw closed 8 months ago
1
sc-type "$<-.data.from" error

#43 beemeeee closed 8 months ago
1
Mouse scRNAseq data annotation

#42 zhongguozhiwang opened 1 year ago
0
Scaling Only Marker Genes

#41 shahrozeabbas closed 1 year ago
1
Malignant cells?

#40 SirKuikka closed 1 year ago
2
unable to load example data or own file

#39 mocherry opened 1 year ago
1
bubble plot vizualization: the inner bubbles correspond to considered cell types for each cluster,

#38 Sophon-0 closed 1 year ago
1
Does adapting this to use with scATACseq make sense, with coordinates instead of genes?

#37 ahdee closed 1 year ago
1
Can I add some markers that are not in gs_list

#36 ryf0810 closed 1 year ago
0
How to view the main marker genes in the SC type score?

#35 suhuanhou opened 1 year ago
0
bubble plot vizualization with gridExtra::grid.arrange over scater::multiplot

#34 pseudacriscrucifer opened 1 year ago
1
Could the detection of oligodendrocytes be possibly improved?

#33 LASeeker opened 1 year ago
3
Annotate cell clusters when rownames are transcript IDs

#32 gadepallivs opened 1 year ago
0
Error in checkGeneSymbols(markers_all) : could not find function "checkGeneSymbols"

#31 lbbars opened 1 year ago
1
Illegal gene symbols

#30 bhanco opened 1 year ago
0
scale.data for SCTransformed and integrated datasets

#29 caro471 closed 1 year ago
0
Is it suitable for lung cancer scRNA-seq analysis?

#28 wisRen closed 1 year ago
2
Annotate the mouse scRNA data

#27 yangfeizZZ opened 1 year ago
2
SNV analysis from the paper

#26 pedriniedoardo closed 1 year ago
1
Cluster settings in web app

#25 FrankStarling closed 1 year ago
1
documentation for sc-type

#24 cathalgking opened 1 year ago
1
Quickstart - Missing dependency "openxlsx"

#23 aerickso closed 1 year ago
1
'Rcpp_precious_remove' not provided by package 'Rcpp'

#22 ChaseTaylor939 closed 1 year ago
3
summary table

#21 antoine4ucsd closed 1 year ago
2