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Illumina
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ExpansionHunter
A tool for estimating repeat sizes
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Exome Sequencing - Accuracy issues?
#144
wsproviero
opened
2 years ago
2
low depth results in WGS >40X
#143
neoscreen
closed
2 years ago
0
Filtering reads by number of spanning reads
#142
dalmiaa
opened
2 years ago
1
basic_string::substr: __pos (which is 18446744073709551587) > this->size() (which is 250)
#141
Nehir291
opened
2 years ago
0
Switch build test from travis to github actions
#140
ctsa
closed
2 years ago
0
Using different input bam files
#139
MeiShu00
closed
2 years ago
2
Error compiling Expansion Hunter
#138
hchetia
closed
2 years ago
20
Remove field shadowing superclass field
#137
Lenbok
closed
2 years ago
5
Error loading locus locus_562: Flanks can contain at most 5 characters N but found 726 Ns
#136
Nehir291
opened
2 years ago
2
Is it possible to convert EHdn single sample STR profiles to EH variant catalog format?
#135
hevmarriott
opened
2 years ago
3
Error in installation (make command)
#134
tahirasma
closed
3 years ago
2
Add GIPC1 and sort repeats
#133
yjqiu
closed
3 years ago
0
Questions about how to set '--output prefix'
#132
sunbacteria
closed
2 years ago
5
Is it possible to run EH in parallel for a big catalog?
#131
serge2016
opened
3 years ago
1
Request to add several repeat expansions
#130
bopohdr
opened
3 years ago
2
Try to use it in kinship analysis
#129
katerinaoleynikova
opened
3 years ago
3
Request to add GIPC1 (Deng J, Yu J, Li P, et al. 2020)
#128
fjmuzengyiheng
closed
3 years ago
4
Add docker file for EH
#127
traxexx
opened
3 years ago
0
Amelogenin searching
#126
katerinaoleynikova
opened
3 years ago
0
Include additional fields in the json output
#125
bw2
opened
3 years ago
1
Error in installing
#124
baoyl818
opened
3 years ago
2
Homozygous STRs
#123
depreeuwj
opened
3 years ago
5
Problem related to the pre-installed software and packages
#122
katerinaoleynikova
opened
3 years ago
3
High RAM usage in "seeking" mode.
#121
titoghose
opened
3 years ago
3
Specifying offtarget regions for loci with multiple variants
#120
bw2
closed
3 years ago
1
Cannot process offtarget mates for locus_n because repeat unit is not set
#119
mvcakir
opened
3 years ago
5
`analyzers.size() == 1'
#118
mvcakir
closed
3 years ago
3
Advanced options
#117
melnel000
opened
3 years ago
10
Sync branches
#116
egor-dolzhenko
closed
3 years ago
0
About locus length
#115
kumara3
opened
3 years ago
8
Update aligner and repeat catalogs
#114
egor-dolzhenko
closed
3 years ago
0
Removed repeats NIPA1, GLS and RFC1
#113
leonschuetz
closed
3 years ago
3
To add gene ARX to variant catalog
#112
QuanLG
closed
3 years ago
7
Realigned BAM visualization
#111
apredeus
closed
3 years ago
3
[Invalid contig name chr1]
#110
ghost
closed
3 years ago
4
Region extension length
#109
depreeuwj
closed
3 years ago
2
EHv4 link error on MacOSX: "Undefined symbols for architecture x86_64: "testing::internal::g_linked_ptr_mutex"
#108
bw2
closed
3 years ago
3
EHv4 link error on CentOS7: "undefined reference to boost::system::detail::generic_category_ncx()"
#107
bw2
closed
3 years ago
4
Update to version 4
#106
egor-dolzhenko
closed
3 years ago
0
Sync up branches
#105
egor-dolzhenko
closed
3 years ago
0
ExpansionHunter for PCR-not-free protocol
#104
golubnikova
opened
3 years ago
1
Repeat on Forward and reverse strand
#103
kumara3
closed
3 years ago
5
Update GLS annotation
#102
yjqiu
closed
3 years ago
1
I would like to use in plant, de novo identify the repeat by
#101
wangnan9394
opened
3 years ago
3
Looking for a variant catalog for C. elegans
#100
moldach
opened
4 years ago
3
Skip secondary alignments during read recovery
#99
egor-dolzhenko
closed
4 years ago
0
enhance index search
#98
yangmqglobe
opened
4 years ago
1
Request to add SAMD12 (Ishiura et al 2018)
#97
rcb2011
opened
4 years ago
8
"Invalid contig name X" using example data
#96
leekaiinthesky
closed
4 years ago
7
Request to append the ATTTC expansion in DAB1 to the variant catalog
#95
ghost
opened
4 years ago
2
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