Illumina ExpansionHunter issues

Illumina / ExpansionHunter

A tool for estimating repeat sizes

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issues

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Is it possible to count the reads of breakends of STR with EH outputs?

#150 a7420174 opened 2 years ago
8
Optimize extractMates

#149 bw2 opened 3 years ago
0
bam which is separated by chromosome

#148 Emi-sed opened 3 years ago
5
Genotype differences between versions

#147 aarthi-mohan opened 3 years ago
1
Issue with bgzf_useek() in "Streaming Reads"

#146 titoghose opened 3 years ago
1
No patch for step for 'abseil'

#145 alanmejiamaza opened 3 years ago
3
Exome Sequencing - Accuracy issues?

#144 wsproviero opened 3 years ago
2
low depth results in WGS >40X

#143 neoscreen closed 3 years ago
0
Filtering reads by number of spanning reads

#142 dalmiaa opened 3 years ago
1
basic_string::substr: __pos (which is 18446744073709551587) > this->size() (which is 250)

#141 Nehir291 opened 3 years ago
0
Switch build test from travis to github actions

#140 ctsa closed 3 years ago
0
Using different input bam files

#139 MeiShu00 closed 3 years ago
2
Error compiling Expansion Hunter

#138 hchetia closed 3 years ago
20
Remove field shadowing superclass field

#137 Lenbok closed 3 years ago
5
Error loading locus locus_562: Flanks can contain at most 5 characters N but found 726 Ns

#136 Nehir291 opened 3 years ago
4
Is it possible to convert EHdn single sample STR profiles to EH variant catalog format?

#135 hevmarriott opened 3 years ago
3
Error in installation (make command)

#134 tahirasma closed 3 years ago
2
Add GIPC1 and sort repeats

#133 yjqiu closed 3 years ago
0
Questions about how to set '--output prefix'

#132 sunbacteria closed 3 years ago
5
Is it possible to run EH in parallel for a big catalog?

#131 serge2016 opened 3 years ago
1
Request to add several repeat expansions

#130 bopohdr opened 3 years ago
2
Try to use it in kinship analysis

#129 katerinaoleynikova opened 3 years ago
3
Request to add GIPC1 (Deng J, Yu J, Li P, et al. 2020)

#128 fjmuzengyiheng closed 3 years ago
4
Add docker file for EH

#127 traxexx opened 3 years ago
0
Amelogenin searching

#126 katerinaoleynikova opened 3 years ago
0
Include additional fields in the json output

#125 bw2 opened 3 years ago
1
Error in installing

#124 baoyl818 opened 3 years ago
2
Homozygous STRs

#123 depreeuwj opened 3 years ago
5
Problem related to the pre-installed software and packages

#122 katerinaoleynikova opened 3 years ago
3
High RAM usage in "seeking" mode.

#121 titoghose opened 3 years ago
3
Specifying offtarget regions for loci with multiple variants

#120 bw2 closed 3 years ago
1
Cannot process offtarget mates for locus_n because repeat unit is not set

#119 mvcakir opened 3 years ago
5
`analyzers.size() == 1'

#118 mvcakir closed 3 years ago
3
Advanced options

#117 melnel000 opened 3 years ago
10
Sync branches

#116 egor-dolzhenko closed 3 years ago
0
About locus length

#115 kumara3 opened 3 years ago
8
Update aligner and repeat catalogs

#114 egor-dolzhenko closed 3 years ago
0
Removed repeats NIPA1, GLS and RFC1

#113 leonschuetz closed 3 years ago
3
To add gene ARX to variant catalog

#112 QuanLG closed 3 years ago
7
Realigned BAM visualization

#111 apredeus closed 3 years ago
3
[Invalid contig name chr1]

#110 ghost closed 4 years ago
4
Region extension length

#109 depreeuwj closed 4 years ago
2
EHv4 link error on MacOSX: "Undefined symbols for architecture x86_64: "testing::internal::g_linked_ptr_mutex"

#108 bw2 closed 4 years ago
3
EHv4 link error on CentOS7: "undefined reference to boost::system::detail::generic_category_ncx()"

#107 bw2 closed 4 years ago
4
Update to version 4

#106 egor-dolzhenko closed 4 years ago
0
Sync up branches

#105 egor-dolzhenko closed 4 years ago
0
ExpansionHunter for PCR-not-free protocol

#104 golubnikova opened 4 years ago
1
Repeat on Forward and reverse strand

#103 kumara3 closed 4 years ago
5
Update GLS annotation

#102 yjqiu closed 4 years ago
1
I would like to use in plant, de novo identify the repeat by

#101 wangnan9394 opened 4 years ago
3

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