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ImagingDataCommons
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ETL
(CORE REPO)
Apache License 2.0
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Ingest RMS clinical data
#46
fedorov
opened
1 year ago
18
Investigate ingestion of HTAN related data
#45
fedorov
opened
1 year ago
2
Duke-Breast-Cancer-MRI clinical data is missing
#44
fedorov
opened
1 year ago
1
Values for `dicom_patient_id` are invalid for the `acrin_6698` collection
#43
fedorov
closed
1 year ago
2
acrin_6698 sbrgrade NAs are replaced with nulls
#42
fedorov
opened
2 years ago
2
table_metadata should indicate whether table dictionary was parsed from sources or derived
#41
fedorov
opened
2 years ago
2
Use fully resolved versioned table names in all places
#40
fedorov
closed
2 years ago
1
dicom_patient_id appears to be missing in several clinical tables
#39
fedorov
opened
2 years ago
2
Inconsistencies identified for the ISPY1 clinical table
#38
fedorov
opened
2 years ago
4
Integrate 'Legacy' Clinical data into new clinical dataset.
#37
G-White-ISB
opened
2 years ago
0
Add regression testing to confirm consistency of clinical table schemas with column_metadata
#36
fedorov
opened
2 years ago
2
Inconsistencies identified for hnscc_3dct_rt_clinical table
#35
fedorov
closed
2 years ago
2
Consider renaming "variable" to "column" in "column_metadata"
#34
fedorov
closed
2 years ago
2
variable_label should not be blank
#33
fedorov
closed
2 years ago
3
[clinical] collection_id should not be an array
#32
fedorov
closed
2 years ago
3
v8 and v9 revisions
#31
bcli4d
closed
2 years ago
0
Define BQ layout of clinical data tables
#30
fedorov
closed
2 years ago
1
Clinical data per-table metadata tracking
#29
fedorov
closed
2 years ago
3
[clinical] Support NLST clinical data
#28
fedorov
closed
1 year ago
9
Map the patient identifier column in the clinical collections to the DICOM patientID
#27
G-White-ISB
closed
2 years ago
2
[clinical] Add PatientID to the per-collection tables (whenever it is not already available)
#26
fedorov
closed
2 years ago
7
[clinical] Add column to point to the dataset/table from the dictionary
#25
fedorov
closed
2 years ago
8
[clinical] Capture provenance of the collection-specific columns
#24
fedorov
closed
2 years ago
1
[clinical] Clinical data "inventory" table
#23
fedorov
closed
2 years ago
4
[clinical] Fix out of order columns in the per-collection tables
#22
fedorov
closed
2 years ago
5
[clinical] CPTAC clinical metadata
#21
fedorov
closed
2 years ago
13
[clinical] Improve harmonization of ACRIN and non-ACRIN tables schema
#20
fedorov
closed
2 years ago
2
[clinical] table prefix should use idc_webapp_collection_id from original_collections_metadata
#19
fedorov
closed
2 years ago
2
S27wc
#18
bcli4d
closed
2 years ago
0
S24 whc
#17
bcli4d
closed
3 years ago
0
V3 specific versions of json and dicom_all files.
#16
bcli4d
closed
3 years ago
0
add definitions for helper views schemas
#15
fedorov
closed
3 years ago
0
Make column names capitalization consistent
#14
fedorov
opened
3 years ago
0
Cleanup
#13
bcli4d
closed
3 years ago
0
Changed dicom_all column names crdc_XXX_uuid --> XXX_uuid
#12
bcli4d
closed
3 years ago
0
Preparing for v3.
#11
bcli4d
closed
3 years ago
0
S17wc
#10
bcli4d
closed
3 years ago
0
Added tcia_species and tcia_cancerType to dicom_all
#9
bcli4d
closed
3 years ago
0
S15wc
#8
bcli4d
closed
3 years ago
0
add a folder to maintain BQ QA queries
#7
fedorov
closed
3 years ago
2
S15wc
#6
bcli4d
closed
3 years ago
0
S12whc
#5
bcli4d
closed
3 years ago
0
Consider adding instance size to the BQ tables
#4
fedorov
closed
2 years ago
4
Wjrl dev
#3
wlongabaugh
closed
4 years ago
0
Rows column populated incorrectly
#2
fedorov
closed
3 years ago
9
Missing mergeschemas.py
#1
fedorov
closed
4 years ago
4