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InfectionMedicineProteomics
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BINN
Generating biologically informed neural networks
https://infectionmedicineproteomics.github.io/BINN/
MIT License
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10
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Question about drawing the Sankey plot
#45
oahux28
opened
4 weeks ago
0
Fix bug
#44
ErikHartman
opened
5 months ago
0
Ndpia
#43
ErikHartman
closed
5 months ago
0
max() arg is an empty sequence
#42
ShivaAryal
opened
6 months ago
2
Issue regarding creation of network
#41
rayadheeraj
closed
7 months ago
1
Add random seed
#40
ErikHartman
closed
8 months ago
0
Seeking Assistance with Reproducing Results in 'Interpreting biologically informed neural networks' Paper
#39
123nineh
closed
8 months ago
1
suggestions for user friendly
#38
neurozhangs
closed
8 months ago
0
Test pr
#37
ErikHartman
closed
9 months ago
0
Commit to test github actions
#36
ErikHartman
closed
10 months ago
1
Average explainer
#35
ErikHartman
closed
10 months ago
0
Several minor fixes
#34
ErikHartman
closed
11 months ago
0
:bug: tensorboard dependency missing, API update
#33
enryH
closed
10 months ago
6
Changed imports to lightning and updated the overall import versions
#32
ErikHartman
closed
11 months ago
1
Update the API to the new Lightning-package from PyTorch and make sure everything runs smoothly.
#31
ErikHartman
closed
11 months ago
0
Fan working now
#30
ErikHartman
closed
11 months ago
0
Fixed bug in importance_network and plot for subgraphs
#29
ErikHartman
closed
1 year ago
0
Docs
#28
ErikHartman
closed
1 year ago
0
Input clarification
#27
danielgeiszler
closed
1 year ago
2
Add zenodo badge to README
#26
ErikHartman
closed
1 year ago
0
update docs and notebooks
#25
ErikHartman
closed
1 year ago
0
Parent and child --> source and target
#24
ErikHartman
closed
1 year ago
0
Change "parent" and "child" to either from/to or source/target
#23
ErikHartman
closed
1 year ago
0
Merge non-multiclass connections if mutliclass == False
#22
ErikHartman
closed
1 year ago
0
Merge connections going into "Other connections X"
#21
ErikHartman
closed
1 year ago
0
Minor changes to plotting
#20
ErikHartman
closed
1 year ago
0
Linting and requirements
#19
ErikHartman
closed
1 year ago
0
Create python-app.yml
#18
ErikHartman
closed
1 year ago
0
Add testing data that makes sure that explainer works by having mock data that simulates one important protein and pathway
#17
ErikHartman
opened
1 year ago
0
Added tests
#16
ErikHartman
closed
1 year ago
0
Removed the underscore split from the importance network and plotting
#15
ErikHartman
closed
1 year ago
0
Refactor RecursivePathwayElimination API
#14
arnscott
opened
1 year ago
1
Bug with pandas 2.0.3
#13
ErikHartman
closed
1 year ago
1
Add pypi badge to README
#12
ErikHartman
closed
1 year ago
0
Normalization as default
#11
ErikHartman
closed
1 year ago
0
Sankey plots do not work with new explain_average function
#10
arnscott
closed
1 year ago
2
Recursive pathway elimination
#9
ErikHartman
closed
1 year ago
0
Refactor network
#8
ErikHartman
closed
1 year ago
0
Generalize to multiple classes
#7
ErikHartman
closed
1 year ago
0
Packaging setup
#6
arnscott
closed
1 year ago
0
Docs
#5
ErikHartman
closed
1 year ago
0
Generalization update
#4
ErikHartman
closed
1 year ago
0
Added explain_average to BINNExplainer
#3
ErikHartman
closed
1 year ago
0
Network package refactor
#2
ErikHartman
closed
1 year ago
0
Create LICENSE
#1
ErikHartman
closed
2 years ago
0